setup_paper_env.sh
dist/
ctxcore/
pySCENIC/
experiments/
/data/
results/
result_logs/
__pycache__/
.ipynb_checkpoints
.DS_Store
experiment_used_scripts/
lib
view.html
test.html
Untitled.ipynb
demo_mESC_grn.hdf5
docs/_build/
flashscenic_data/
fetal-mac-edlow_grn.ipynb
fetal-mac-edlow_preprocess.ipynb
CLAUDE.md
.claude/
TODO.md
