Metadata-Version: 2.4
Name: ficture
Version: 0.0.5.6
Summary: Segmentation free factor analysis for sub-micron resolution spatial transcriptomics
Author-email: Yichen Si <ycsi@umich.edu>
License: CC BY-NC 4.0
Project-URL: Homepage, https://seqscope.github.io/ficture/
Project-URL: Bug Tracker, https://github.com/seqscope/ficture/issues
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pyarrow
Requires-Dist: scipy
Requires-Dist: scikit-learn
Requires-Dist: joblib
Requires-Dist: matplotlib
Requires-Dist: Pillow
Requires-Dist: Jinja2
Requires-Dist: opencv-python
Requires-Dist: shapely
Requires-Dist: geojson
Requires-Dist: geopandas
Requires-Dist: ete3
Requires-Dist: PyQt5
Dynamic: license-file

# FICTURE

2025-05: we implemented [a new version](https://github.com/Yichen-Si/punkst) in a c++ command line tool that is substantially more efficiency and (hopefully) easier to use. If you are interested in applying FICTURE to large datasets we would love to have you try it out.

---

FICTURE: Scalable segmentation-free analysis of sub-micron resolution spatial transcriptomics

Install
```
pip install ficture
```

Documentation [https://seqscope.github.io/ficture/](https://seqscope.github.io/ficture/)

[Paper](https://www.nature.com/articles/s41592-024-02415-2) (Real data results in the preprint are [available on Zenodo](https://zenodo.org/records/10070621))

For a brief introduction, see [slides used for AGBT talk](https://tinyurl.com/3w5xjesj)
