fhirpack.extraction package — fhirpack 0.0.2b0 documentation

# fhirpack.extraction package

## Submodules

## fhirpack.extraction.base module

class fhirpack.extraction.base.BaseExtractorMixin

  Bases: `object`

  __dict__ = mappingproxy({'__module__': 'fhirpack.extraction.base', 'getReferences': <function BaseExtractorMixin.getReferences>, 'getResources': <function BaseExtractorMixin.getResources>, 'searchResources': <function BaseExtractorMixin.searchResources>, 'getAbsolutePaths': <function BaseExtractorMixin.getAbsolutePaths>, 'getURLBytes': <function BaseExtractorMixin.getURLBytes>, 'getFromFiles': <function BaseExtractorMixin.getFromFiles>, 'getDICOMInstances': <function BaseExtractorMixin.getDICOMInstances>, '__dict__': <attribute '__dict__' of 'BaseExtractorMixin' objects>, '__weakref__': <attribute '__weakref__' of 'BaseExtractorMixin' objects>, '__doc__': None, '__annotations__': {}})
  __doc__ = None
  __module__ = 'fhirpack.extraction.base'
  __weakref__

    list of weak references to the object (if defined)

  getAbsolutePaths(paths: list[str], input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None)
  getDICOMInstances(input: Optional[list[str]] = None, operateOnCol: str = 'data', resultInCol: Optional[str] = None, params: Optional[dict] = None, inPlace: dict = False)
  getFromFiles(input: list[str])

    Creates a Frame object from json files containing fhir resources

  getReferences(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, params: Optional[dict] = None, ignoreFrame: bool = False, raw: bool = False)
  getResources(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, resourceType: Optional[str] = None, ignoreFrame: bool = False, raw: bool = False)
  getURLBytes(input: Optional[list[str]] = None, operateOnCol: str = 'data', resultInCol: Optional[str] = None, params: dict = {})
  searchResources(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, resourceType: Optional[str] = None, ignoreFrame: bool = True, raw: bool = False)

## fhirpack.extraction.base_test module

fhirpack.extraction.base_test.y(request)

## fhirpack.extraction.condition module

class fhirpack.extraction.condition.ExtractorConditionMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.condition'
  getConditions(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.condition_test module

## fhirpack.extraction.diagnosticreport module

class fhirpack.extraction.diagnosticreport.ExtractorDiagnosticReportMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.diagnosticreport'
  getDiagnosticReports(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.endpoint module

class fhirpack.extraction.endpoint.ExtractorEndpointMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.endpoint'
  getEndpoints(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.episodeofcare module

class fhirpack.extraction.episodeofcare.ExtractorEpisodeOfCareMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.episodeofcare'
  getEpisodesOfCare(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.familymemberhistory module

class fhirpack.extraction.familymemberhistory.ExtractorFamilyMemberHistoryMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.familymemberhistory'
  getFamilyMemberHistories(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.imagingstudy module

class fhirpack.extraction.imagingstudy.ExtractorImagingStudyMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.imagingstudy'
  getImagingStudies(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.list module

class fhirpack.extraction.list.ExtractorListMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.list'
  getLists(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.medicationadministration module

class fhirpack.extraction.medicationadministration.ExtractorMedicationAdministrationMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.medicationadministration'
  getMedicationAdministrations(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.medicationrequest module

class fhirpack.extraction.medicationrequest.ExtractorMedicationRequestMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.medicationrequest'
  getMedicationRequests(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.observation module

class fhirpack.extraction.observation.ExtractorObservationMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.observation'
  getObservations(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.patient module

class fhirpack.extraction.patient.ExtractorPatientMixin

  Bases: `BaseExtractorMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction.patient'
  getLinkedPatients(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)
  getPatients(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference]]] = None, searchParams: Optional[dict] = None, includeLinkedPatients=False, params: Optional[dict] = None, ignoreFrame: bool = False)
  getRootPatients(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## fhirpack.extraction.patient_test module

## fhirpack.extraction.sample module

class fhirpack.extraction.sample.BaseExtractorMixin

  Bases: `object`

  __dict__ = mappingproxy({'__module__': 'fhirpack.extraction.sample', 'getSampleExtractionMethod': <function BaseExtractorMixin.getSampleExtractionMethod>, '__dict__': <attribute '__dict__' of 'BaseExtractorMixin' objects>, '__weakref__': <attribute '__weakref__' of 'BaseExtractorMixin' objects>, '__doc__': None, '__annotations__': {}})
  __doc__ = None
  __module__ = 'fhirpack.extraction.sample'
  __weakref__

    list of weak references to the object (if defined)

  getSampleExtractionMethod(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, params: Optional[dict] = None, ignoreFrame: bool = False)

## Module contents

class fhirpack.extraction.ExtractorMixin

  Bases: `ExtractorObservationMixin`, `ExtractorPatientMixin`, `ExtractorConditionMixin`, `ExtractorDiagnosticReportMixin`, `ExtractorEpisodeOfCareMixin`, `ExtractorFamilyMemberHistoryMixin`, `ExtractorMedicationRequestMixin`, `ExtractorMedicationAdministrationMixin`, `ExtractorListMixin`, `ExtractorImagingStudyMixin`, `ExtractorEndpointMixin`

  __doc__ = None
  __module__ = 'fhirpack.extraction'