MANIFEST.in
README.md
setup.py
FASTRAL/Sampler.py
FASTRAL/__init__.py
FASTRAL/fastral.py
FASTRAL/fastral_infer.py
FASTRAL/utils.py
FASTRAL.egg-info/PKG-INFO
FASTRAL.egg-info/SOURCES.txt
FASTRAL.egg-info/dependency_links.txt
FASTRAL.egg-info/entry_points.txt
FASTRAL.egg-info/requires.txt
FASTRAL.egg-info/top_level.txt
FASTRAL/ASTRAL-modified/LICENSE
FASTRAL/ASTRAL-modified/README.md
FASTRAL/ASTRAL-modified/__init__.py
FASTRAL/ASTRAL-modified/make.sh
FASTRAL/ASTRAL-modified/manifest.text
FASTRAL/ASTRAL-modified/.github/ISSUE_TEMPLATE/bug_report.md
FASTRAL/ASTRAL-modified/.github/ISSUE_TEMPLATE/feature_request.md
FASTRAL/ASTRAL-modified/lib/JSAP-2.1.jar
FASTRAL/ASTRAL-modified/lib/colt.jar
FASTRAL/ASTRAL-modified/lib/main.jar
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractClusterCollection$1$1.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractClusterCollection$1.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractClusterCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractClusterCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractComputeMinCostTask.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractComputeMinCostTask.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractDataCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractDataCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractInference.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractInference.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractPartition.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractPartition.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractWeightCalculator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/AbstractWeightCalculator.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/BipartitionWeightCalculator$Intersects.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/BipartitionWeightCalculator$Quadrapartition.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/BipartitionWeightCalculator$Results.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/BipartitionWeightCalculator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/BipartitionWeightCalculator.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/CannotResolveException.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/CannotResolveException.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/CommandLine.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/CommandLine.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLClusterCollection$1$1.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLClusterCollection$1.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLClusterCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLClusterCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLComputeMinCostTask.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLComputeMinCostTask.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLDataCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLDataCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLInference.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLInference.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLWeightCalculator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DLWeightCalculator.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DeepCoalescencesCounter.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/DeepCoalescencesCounter.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/GlobalMaps.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/GlobalMaps.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/IClusterCollection$VertexPair.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/IClusterCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/IClusterCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Options.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Options.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Polytomy.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Polytomy.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Polytree$PTCluster.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Polytree$PTNode.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Polytree$PTPartition.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Polytree.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Polytree.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Posterior.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Posterior.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/QuartetCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/QuartetCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/STBipartition.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/STBipartition.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SimilarityMatrix$1.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SimilarityMatrix$2.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SimilarityMatrix.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SimilarityMatrix.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SingleIndividualSample.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SingleIndividualSample.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Solution.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Solution.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SpeciesMapper.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/SpeciesMapper.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/TaxonIdentifier.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/TaxonIdentifier.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/TaxonNameMap.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/TaxonNameMap.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Tripartition.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Tripartition.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Utils$BSComparator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Utils$ClusterComparator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Utils.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/Utils.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQClusterCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQClusterCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQComputeMinCostTask.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQComputeMinCostTask.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQDataCollection.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQDataCollection.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQInference$1.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQInference$NodeData.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQInference.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQInference.java
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQWeightCalculator$CondensedTraversalWeightCalculator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQWeightCalculator$SetWeightCalculator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQWeightCalculator$TraversalWeightCalculator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQWeightCalculator$WeightCalculatorAlgorithm.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQWeightCalculator.class
FASTRAL/ASTRAL-modified/main/phylonet/coalescent/WQWeightCalculator.java
FASTRAL/ASTRAL-modified/main/phylonet/tree/io/NewickWriter.class
FASTRAL/ASTRAL-modified/main/phylonet/tree/io/NewickWriter.java
FASTRAL/ASTRAL-modified/main/phylonet/tree/model/sti/STITreeCluster$ClusterIterator.class
FASTRAL/ASTRAL-modified/main/phylonet/tree/model/sti/STITreeCluster$Vertex.class
FASTRAL/ASTRAL-modified/main/phylonet/tree/model/sti/STITreeCluster.class
FASTRAL/ASTRAL-modified/main/phylonet/tree/model/sti/STITreeCluster.java
FASTRAL/ASTRAL-modified/main/phylonet/util/BitSet.class
FASTRAL/ASTRAL-modified/main/phylonet/util/BitSet.java
FASTRAL/ASTRID/ASTRID-linux
FASTRAL/ASTRID/ASTRID-osx
FASTRAL/ASTRID/__init__.py