Metadata-Version: 1.1
Name: fastq-anonymous
Version: 1.0.1
Summary: Change the sequence of a fastq file to enable sharing of confidential information, for troubleshooting￼ of tools.
Home-page: https://github.com/wdecoster/fastq-anonymous
Author: Wouter De Coster
Author-email: decosterwouter@gmail.com
License: MIT
Description: fastq-anonymous
        ===============
        
        Change the sequence and identifier of a fastq file to enable sharing of
        confidential information for troubleshooting
        
        INSTALLATION
        ------------
        
        ``pip install fastq-anonymous``
        
        USAGE
        -----
        
        | Reads from stdin and writes to stdout. Sequences are by default
          replaced by random nucleotides.
        | Fastq identifiers and description are also anonymized.
        | Read lengths and quality strings are preserverd.
        
        ::
        
            optional arguments:
              -h, --help     show this help message and exit
              -v, --version  Print version and exit.
              -m, --mask     Mask all nucleotides using N
        
        EXAMPLES
        --------
        
        .. code:: bash
        
            cat reads.fastq.gz | fastq-anonymous > anonymous_reads.fastq
        
            gunzip -c reads.fastq.gz | fastq-anonymous > anonymous_reads.fastq
        
            gunzip -c reads.fastq.gz | fastq-anonymous | gzip > anonymous_reads.fastq.gz
        
Keywords: nanopore sequencing plotting quality control
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
