Metadata-Version: 2.1
Name: fastgaia
Version: 0.1.0
Summary: A tool to infer node locations and states from tree sequences.
Home-page: https://github.com/chris-a-talbot/fastgaia
Author: Chris Talbot
Author-email: chtalbot@umich.edu
License: MIT
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: tskit

# fastgaia

fastgaia is an implementation of gaia that can run 30x faster for large tree sequences in continuous space and improves inferences in the presence of internal samples.

## Features

- **Continuous Inference**: Infers continuous locations of nodes based on provided sample locations or tree sequence data.
- **Discrete Inference**: Infers discrete states of nodes with optional cost matrix considerations.
- **Flexible Output**: Outputs results in CSV format for easy analysis.

## Installation

You can install fastgaia via pip:

```bash
pip install fastgaia
