# start snippet scores basic
fancplot chr18:6mb-10mb -p scores architecture/domains/fanc_example_100kb.insulation
# end snippet scores basic
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_scores_example.png chr18:6mb-10mb -p scores architecture/domains/fanc_example_100kb.insulation

# start snippet scores genomic
fancplot chr18:6mb-10mb -p scores -g architecture/domains/fanc_example_100kb.insulation
# end snippet scores genomic
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_scores_genomic.png chr18:6mb-10mb -p scores -g architecture/domains/fanc_example_100kb.insulation

# start snippet scores parameters
fancplot chr18:6mb-10mb -p scores -g -c PiYG -vmin -0.4 -vmax 0.4 architecture/domains/fanc_example_100kb.insulation
# end snippet scores parameters
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_scores_parameters.png chr18:6mb-10mb -p scores -g -c PiYG -vmin -0.4 -vmax 0.4 architecture/domains/fanc_example_100kb.insulation


# start snippet line basic
fancplot chr18:6mb-10mb -p line architecture/domains/fanc_example_100kb.insulation_1mb.bw
# end snippet line basic
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line.png chr18:6mb-10mb -p line architecture/domains/fanc_example_100kb.insulation_1mb.bw

# start snippet line step
fancplot chr18:6mb-10mb -p line -s step architecture/domains/fanc_example_100kb.insulation_1mb.bw
# end snippet line step
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line_step.png chr18:6mb-10mb -p line -s step architecture/domains/fanc_example_100kb.insulation_1mb.bw


# start snippet line fill
fancplot chr18:6mb-10mb -p line -f architecture/domains/fanc_example_100kb.insulation_1mb.bw
# end snippet line fill
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line_fill.png chr18:6mb-10mb -p line -f architecture/domains/fanc_example_100kb.insulation_1mb.bw

# start snippet line limit
fancplot chr18:6mb-10mb -p line -f -y -1 1 architecture/domains/fanc_example_100kb.insulation_1mb.bw
# end snippet line limit
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line_limit.png chr18:6mb-10mb -p line -f -y -1 1 architecture/domains/fanc_example_100kb.insulation_1mb.bw

# start snippet line color
fancplot chr18:6mb-10mb -p line -f -c cyan --alpha 1. architecture/domains/fanc_example_100kb.insulation_1mb.bw
# end snippet line color
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line_color.png chr18:6mb-10mb -p line -f -c cyan --alpha 1. architecture/domains/fanc_example_100kb.insulation_1mb.bw

# start snippet line multi
fancplot chr18:6mb-10mb -p line -f architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw
# end snippet line multi
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line_multi.png chr18:6mb-10mb -p line -f architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw

# start snippet line labels
fancplot chr18:6mb-10mb -p line -l 1mb 2mb -f architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw
# end snippet line labels
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line_labels.png chr18:6mb-10mb -p line -l 1mb 2mb -f architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw

# start snippet line legend
fancplot chr18:6mb-10mb -p line -l 1mb 2mb -f architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw
# end snippet line legend
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_line_legend.png chr18:6mb-10mb -p line -l 1mb 2mb --legend-location "upper right" -f architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw


# start snippet bar example
fancplot chr18:6mb-10mb -p bar -l 1mb 2mb architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw
# end snippet bar example
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_bar_example.png chr18:6mb-10mb -p bar -l 1mb 2mb --legend-location "upper right" architecture/domains/fanc_example_100kb.insulation_1mb.bw architecture/domains/fanc_example_100kb.insulation_2mb.bw

# start snippet bar boundaries
fancplot chr18:20mb-30mb -p bar architecture/domains/fanc_example_100kb.insulation_boundaries_1mb.bed
# end snippet bar boundaries
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_bar_boundaries.png chr18:20mb-30mb -p bar architecture/domains/fanc_example_100kb.insulation_boundaries_1mb.bed

# start snippet bar combined
fancplot chr18:20mb-30mb -p line architecture/domains/fanc_example_100kb.insulation_1mb.bw -p bar architecture/domains/fanc_example_100kb.insulation_boundaries_1mb.bed
# end snippet bar combined
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_bar_combined.png chr18:20mb-30mb -p line architecture/domains/fanc_example_100kb.insulation_1mb.bw -p bar architecture/domains/fanc_example_100kb.insulation_boundaries_1mb.bed


# start snippet layer
fancplot chr18:20mb-30mb -p layer architecture/domains/fanc_example_100kb.insulation_boundaries_1mb.bed
# end snippet layer
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_layer.png chr18:20mb-30mb -p layer architecture/domains/fanc_example_100kb.insulation_boundaries_1mb.bed

# start snippet layer bed
fancplot chr18:20mb-30mb -p layer architecture/domains/fanc_example_100kb.insulation_boundaries_1mb_and_2mb.bed
# end snippet layer bed
fancplot -o ../fanc-doc/fancplot-executable/images/fancplot_layer_bed.png chr18:20mb-30mb -p layer architecture/domains/fanc_example_100kb.insulation_boundaries_1mb_and_2mb.bed



