# start snippet expected basic
fanc expected -p architecture/expected/fanc_example_500kb_expected.png \
              -c chr19 \
              output/hic/binned/fanc_example_500kb.hic \
              architecture/expected/fanc_example_500kb_expected.txt
# end snippet expected basic
fanc expected -p ../docsrc/fanc-executable/fanc-analyse-hic/images/fanc_example_500kb_expected.png \
              -c chr19 \
              output/hic/binned/fanc_example_500kb.hic \
              architecture/expected/fanc_example_500kb_expected.txt

# start snippet expected multi
fanc expected -l "HindIII 100k" "HindIII 5M" "MboI 100k" "MboI 1M" "MboI 50k" \
              -c chr19 -p architecture/expected/expected_multi.png \
              architecture/other-hic/lowc_hindiii_100k_1mb.hic \
              architecture/other-hic/lowc_hindiii_5M_1mb.hic \
              architecture/other-hic/lowc_mboi_100k_1mb.hic \
              architecture/other-hic/lowc_mboi_1M_1mb.hic \
              architecture/other-hic/lowc_mboi_50k_1mb.hic \
              architecture/expected/expected_multi.txt
# end snippet expected multi
fanc expected -l "HindIII 100k" "HindIII 5M" "MboI 100k" "MboI 1M" "MboI 50k" \
              -c chr19 -p ../docsrc/fanc-executable/fanc-analyse-hic/images/expected_multi.png \
              architecture/other-hic/lowc_hindiii_100k_1mb.hic \
              architecture/other-hic/lowc_hindiii_5M_1mb.hic \
              architecture/other-hic/lowc_mboi_100k_1mb.hic \
              architecture/other-hic/lowc_mboi_1M_1mb.hic \
              architecture/other-hic/lowc_mboi_50k_1mb.hic \
              architecture/expected/expected_multi.txt

# start snippet expected fancplot
fancplot -o architecture/expected/fanc_example_500kb_chr18_oe.png \
     chr18:1-78mb -p triangular -e output/hic/binned/fanc_example_500kb.hic \
     -vmin -2 -vmax 2
# end snippet expected fancplot
fancplot -o ../docsrc/fanc-executable/fanc-analyse-hic/images/fanc_example_500kb_chr18_oe.png \
     chr18:1-78mb -p triangular -e output/hic/binned/fanc_example_500kb.hic \
     -vmin -2 -vmax 2
