configargparse>=1.4
faiss-cpu>=1.6.5
fastcluster>=1.1.26
joblib>=1.0.0
lxml>=4.6.2
natsort>=7.1.0
numba>=0.52.0
numpy>=1.19.4
pandas>=1.2.0
pyarrow>=2.0.0
pyteomics>=4.4.0
scikit-learn>=0.24.0
scipy>=1.5.3
spectrum_utils>=0.3.5
tqdm>=4.55.0

[dev]
flake8
