Examples & Demos
=================================

This section contains interactive Jupyter notebook examples demonstrating FADVI's capabilities on real datasets. Comprehensive benchmarking of FADVI against other integration methods on single-cell immune atlas data is included.

.. toctree::
   :maxdepth: 1
   
   benchmark_sc_immune_atlas


.. note::
   To run these notebooks locally, you'll need to install additional dependencies:
   
   .. code-block:: bash
   
      pip install scib scib-metrics atplotlib seaborn

   The dataset used in the benchmark needs to be downloaded separately at `Openproblems <https://openproblems.bio/datasets/cellxgene_census/immune_cell_atlas>`_.
