.coveragerc
.gitignore
CHANGELOG.md
LICENSE.txt
Makefile
README.md
pyproject.toml
.github/workflows/ci.yml
ezfastq/__init__.py
ezfastq/api.py
ezfastq/cli.py
ezfastq/copier.py
ezfastq/fastq.py
ezfastq/map.py
ezfastq/pair.py
ezfastq/scanner.py
ezfastq.egg-info/PKG-INFO
ezfastq.egg-info/SOURCES.txt
ezfastq.egg-info/dependency_links.txt
ezfastq.egg-info/entry_points.txt
ezfastq.egg-info/requires.txt
ezfastq.egg-info/top_level.txt
ezfastq/tests/__init__.py
ezfastq/tests/test_cli.py
ezfastq/tests/test_copier.py
ezfastq/tests/test_fastq.py
ezfastq/tests/test_map.py
ezfastq/tests/data/flat/empty.txt
ezfastq/tests/data/flat/test1_S1_L001_R1_001.fastq.gz
ezfastq/tests/data/flat/test1_S1_L001_R2_001.fastq.gz
ezfastq/tests/data/flat/test2_R1.fq.gz
ezfastq/tests/data/flat/test2_R2.fq.gz
ezfastq/tests/data/flat/test3-reads-r1.fastq
ezfastq/tests/data/flat/test3-reads-r2.fastq
ezfastq/tests/data/nested/test1/test1_S1_L001_R1_001.fastq.gz
ezfastq/tests/data/nested/test1/test1_S1_L001_R2_001.fastq.gz
ezfastq/tests/data/nested/test2/test2_R1.fq.gz
ezfastq/tests/data/nested/test2/test2_R2.fq.gz
ezfastq/tests/data/nested/test3/test3-reads-r1.fastq
ezfastq/tests/data/nested/test3/test3-reads-r2.fastq