LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
src/ExpoSeq/__init__.py
src/ExpoSeq/modelling.py
src/ExpoSeq/msa.py
src/ExpoSeq/pipeline.py
src/ExpoSeq.egg-info/PKG-INFO
src/ExpoSeq.egg-info/SOURCES.txt
src/ExpoSeq.egg-info/dependency_links.txt
src/ExpoSeq.egg-info/requires.txt
src/ExpoSeq.egg-info/top_level.txt
src/ExpoSeq/augment_data/__init__.py
src/ExpoSeq/augment_data/binding_data.py
src/ExpoSeq/augment_data/check_reports.py
src/ExpoSeq/augment_data/collect_fastqs.py
src/ExpoSeq/augment_data/create_mixcr_commands.py
src/ExpoSeq/augment_data/load_data.py
src/ExpoSeq/augment_data/loop_collect_reports.py
src/ExpoSeq/augment_data/mixcr_cl.py
src/ExpoSeq/augment_data/mixcr_nils.py
src/ExpoSeq/augment_data/preset_chooser.py
src/ExpoSeq/augment_data/randomizer.py
src/ExpoSeq/augment_data/read_raw_data.py
src/ExpoSeq/augment_data/structure_files.py
src/ExpoSeq/augment_data/trimming.py
src/ExpoSeq/augment_data/uploader.py
src/ExpoSeq/design/__init__.py
src/ExpoSeq/design/anno_sequence.py
src/ExpoSeq/design/msa_design.py
src/ExpoSeq/design/multi_seq_align.py
src/ExpoSeq/design/utilize_af.py
src/ExpoSeq/modelling/__init__.py
src/ExpoSeq/modelling/create_fasta.py
src/ExpoSeq/modelling/deep_ab.py
src/ExpoSeq/modelling/multi_sequence_align.py
src/ExpoSeq/modelling/nanonet.py
src/ExpoSeq/modelling/set_env.py
src/ExpoSeq/modelling/setup_NetSolP.py
src/ExpoSeq/modelling/local_colab_fold/__init__.py
src/ExpoSeq/modelling/local_colab_fold/installation.py
src/ExpoSeq/plots/__init__.py
src/ExpoSeq/plots/barplot.py
src/ExpoSeq/plots/chord_diagram.py
src/ExpoSeq/plots/clone_fraction.py
src/ExpoSeq/plots/diversity_plot.py
src/ExpoSeq/plots/hist_lvst_dist.py
src/ExpoSeq/plots/hist_lvst_dist_bind.py
src/ExpoSeq/plots/length_distribution.py
src/ExpoSeq/plots/levenshtein_clustering.py
src/ExpoSeq/plots/logo_plot.py
src/ExpoSeq/plots/multiple_length_plot.py
src/ExpoSeq/plots/protein_embedding.py
src/ExpoSeq/plots/protein_embedding_umap.py
src/ExpoSeq/plots/protein_network_embedding.py
src/ExpoSeq/plots/rarefraction_curves.py
src/ExpoSeq/plots/sample_cluster.py
src/ExpoSeq/plots/saveFig.py
src/ExpoSeq/plots/stacked_aa_distribution.py
src/ExpoSeq/plots/tidy_protbert_embedding.py
src/ExpoSeq/plots/venn_diagramm.py
src/ExpoSeq/plots/contents/__init__.py
src/ExpoSeq/plots/contents/hytdrophobicity_metrics.py
src/ExpoSeq/plots/contents/isoelectric_point_scales.py
src/ExpoSeq/plots/contents/simple_protein_property.py
src/ExpoSeq/plots/deprecated/__init__.py
src/ExpoSeq/plots/deprecated/bert_network_embedding.py
src/ExpoSeq/plots/deprecated/cluster_embedding.py
src/ExpoSeq/plots/deprecated/cluster_multiple_antigens.py
src/ExpoSeq/plots/deprecated/embedding_with_binding.py
src/ExpoSeq/plots/deprecated/tidy_cluster_embedding.py
src/ExpoSeq/plots/matrices/__init__.py
src/ExpoSeq/plots/matrices/jaccard_matrix.py
src/ExpoSeq/plots/matrices/make_matrix.py
src/ExpoSeq/plots/matrices/morosita_horn_matrix.py
src/ExpoSeq/plots/matrices/read_matrix.py
src/ExpoSeq/plots/matrices/relative_matrix.py
src/ExpoSeq/plots/matrices/sorensen_matrix.py
src/ExpoSeq/settings/__init__.py
src/ExpoSeq/settings/alignment_plot.md
src/ExpoSeq/settings/aumotative_report.py
src/ExpoSeq/settings/available_presets.py
src/ExpoSeq/settings/blosum_62.txt
src/ExpoSeq/settings/change_save_settings.py
src/ExpoSeq/settings/change_settings.py
src/ExpoSeq/settings/check_dirs.py
src/ExpoSeq/settings/collecting_all_arguments.py
src/ExpoSeq/settings/colorbar.txt
src/ExpoSeq/settings/dendrogram_cluster.md
src/ExpoSeq/settings/directory_manager.py
src/ExpoSeq/settings/figure.py
src/ExpoSeq/settings/font_settings.txt
src/ExpoSeq/settings/full_sequence_finder.py
src/ExpoSeq/settings/general_instructions.py
src/ExpoSeq/settings/global_vars.txt
src/ExpoSeq/settings/layout_finder.py
src/ExpoSeq/settings/legend_settings.txt
src/ExpoSeq/settings/levenshtein_cluster.md
src/ExpoSeq/settings/logo_plot.md
src/ExpoSeq/settings/markdown_builder.py
src/ExpoSeq/settings/merge_fasta.py
src/ExpoSeq/settings/morosita_horn.md
src/ExpoSeq/settings/plot_styler.py
src/ExpoSeq/settings/rarefraction_curves_desc.md
src/ExpoSeq/settings/reports.py
src/ExpoSeq/settings/reports_binding.md
src/ExpoSeq/settings/reset.py
src/ExpoSeq/settings/save_settings.txt
src/ExpoSeq/settings/sequence_embedding.md
src/ExpoSeq/settings/signature.md
src/ExpoSeq/settings/subplot_figure.py
src/ExpoSeq/settings/subplots_manager.py
src/ExpoSeq/software_tests/__init__.py
src/ExpoSeq/software_tests/test_files/__init__.py
src/ExpoSeq/software_tests/tests/__init__.py
src/ExpoSeq/software_tests/tests/test_functional_tests.py