LICENSE
MANIFEST.in
README.md
setup.py
src/ExpoSeq/__init__.py
src/ExpoSeq/pipeline.py
src/ExpoSeq/test_uploader.py
src/ExpoSeq.egg-info/PKG-INFO
src/ExpoSeq.egg-info/SOURCES.txt
src/ExpoSeq.egg-info/dependency_links.txt
src/ExpoSeq.egg-info/requires.txt
src/ExpoSeq.egg-info/top_level.txt
src/ExpoSeq/augment_data/__init__.py
src/ExpoSeq/augment_data/binding_data.py
src/ExpoSeq/augment_data/check_reports.py
src/ExpoSeq/augment_data/collect_fastqs.py
src/ExpoSeq/augment_data/create_mixcr_commands.py
src/ExpoSeq/augment_data/load_data.py
src/ExpoSeq/augment_data/loop_collect_reports.py
src/ExpoSeq/augment_data/mixcr_analyze.py
src/ExpoSeq/augment_data/mixcr_cl.py
src/ExpoSeq/augment_data/mixcr_nils.py
src/ExpoSeq/augment_data/randomizer.py
src/ExpoSeq/augment_data/read_raw_data.py
src/ExpoSeq/augment_data/structure_files.py
src/ExpoSeq/augment_data/trimming.py
src/ExpoSeq/augment_data/uploader.py
src/ExpoSeq/design/__init__.py
src/ExpoSeq/design/anno_sequence.py
src/ExpoSeq/design/msa_design.py
src/ExpoSeq/design/multi_seq_align.py
src/ExpoSeq/design/utilize_af.py
src/ExpoSeq/plots/__init__.py
src/ExpoSeq/plots/barplot.py
src/ExpoSeq/plots/cluster_embedding.py
src/ExpoSeq/plots/embedding_with_binding.py
src/ExpoSeq/plots/hist_lvst_dist.py
src/ExpoSeq/plots/layout_finder.py
src/ExpoSeq/plots/length_distribution.py
src/ExpoSeq/plots/levenshtein_clustering.py
src/ExpoSeq/plots/logo_plot.py
src/ExpoSeq/plots/plt_heatmap.py
src/ExpoSeq/plots/protvec.py
src/ExpoSeq/plots/relative_sequence_abundance.py
src/ExpoSeq/plots/saveFig.py
src/ExpoSeq/plots/stacked_aa_distribution.py
src/ExpoSeq/plots/usq_plot.py
src/ExpoSeq/settings/__init__.py
src/ExpoSeq/settings/available_presets.py
src/ExpoSeq/settings/blosum_62.txt
src/ExpoSeq/settings/change_save_settings.py
src/ExpoSeq/settings/change_settings.py
src/ExpoSeq/settings/check_dirs.py
src/ExpoSeq/settings/colorbar.txt
src/ExpoSeq/settings/font_settings.txt
src/ExpoSeq/settings/general_instructions.py
src/ExpoSeq/settings/global_vars.txt
src/ExpoSeq/settings/legend_settings.txt
src/ExpoSeq/settings/plot_styler.py
src/ExpoSeq/settings/reports.py
src/ExpoSeq/settings/reset.py
src/ExpoSeq/settings/save_settings.txt
src/ExpoSeq/test_data/__init__.py
src/ExpoSeq/test_data/all_alignment_reports.pickle
src/ExpoSeq/test_data/test_files/__init__.py
src/ExpoSeq/test_data/test_files/binding_data.csv
src/ExpoSeq/test_data/test_files/experiment_names.pickle
src/ExpoSeq/test_data/test_files/sequencing_report.csv
src/ExpoSeq/test_data/test_files/test1.fastq
src/ExpoSeq/test_data/test_files/test2.fastq
src/ExpoSeq/test_data/test_files/test3.fastq
src/ExpoSeq/tidy_data/__init__.py
src/ExpoSeq/tidy_data/barplot.py
src/ExpoSeq/tidy_data/clustering.py
src/ExpoSeq/tidy_data/interpret_data.py
src/ExpoSeq/tidy_data/read_extract_data.py
src/ExpoSeq/tidy_data/tidy_USQ_plot_.py
src/ExpoSeq/tidy_data/tidy_alignment_reports.py
src/ExpoSeq/tidy_data/tidy_cluster_embedding.py
src/ExpoSeq/tidy_data/tidy_dendro.py
src/ExpoSeq/tidy_data/tidy_hist_lvst_dist.py
src/ExpoSeq/tidy_data/tidy_rel_sequence_abun.py
src/ExpoSeq/tidy_data/tidy_seqlogoPlot.py
src/ExpoSeq/tidy_data/tidy_stacked_aa_distr.py
src/ExpoSeq/tidy_data/heatmaps/__init__.py
src/ExpoSeq/tidy_data/heatmaps/bool_sequences_matrix.py
src/ExpoSeq/tidy_data/heatmaps/read_matrix.py
src/ExpoSeq/tidy_data/heatmaps/tidy_heatmap_share.py
src/ExpoSeq/tidy_data/heatmaps/tidy_jaccard.py
src/ExpoSeq/tidy_data/heatmaps/tidy_morosita_horn.py
src/ExpoSeq/tidy_data/heatmaps/tidy_sorensen.py