LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
src/expam/__init__.py
src/expam/logger.py
src/expam/main.py
src/expam/sequences.py
src/expam/utils.py
src/expam.egg-info/PKG-INFO
src/expam.egg-info/SOURCES.txt
src/expam.egg-info/dependency_links.txt
src/expam.egg-info/entry_points.txt
src/expam.egg-info/requires.txt
src/expam.egg-info/top_level.txt
src/expam/classify/__init__.py
src/expam/classify/classify.py
src/expam/classify/config.py
src/expam/classify/process.py
src/expam/classify/taxonomy.py
src/expam/cli/__init__.py
src/expam/cli/build.py
src/expam/cli/classify.py
src/expam/cli/main.py
src/expam/cli/tree.py
src/expam/cli/utils.py
src/expam/database/__init__.py
src/expam/database/build.py
src/expam/database/config.py
src/expam/database/db.py
src/expam/database/shm.py
src/expam/ext/__init__.py
src/expam/ext/kmers/__init__.py
src/expam/ext/kmers/extract.pyx
src/expam/ext/kmers/jellyfish.c
src/expam/ext/kmers/kmers.c
src/expam/ext/kmers/_build/src/expam/ext/kmers/extract.c
src/expam/ext/map/__init__.py
src/expam/ext/map/map.pyx
src/expam/ext/map/_build/src/expam/ext/map/map.c
src/expam/ext/sets/__init__.py
src/expam/ext/sets/mfil.c
src/expam/ext/sets/sets.pyx
src/expam/ext/sets/_build/src/expam/ext/sets/sets.c
src/expam/process/__init__.py
src/expam/process/classify.py
src/expam/process/genome.py
src/expam/process/jobworker.py
src/expam/process/manager.py
src/expam/process/piler.py
src/expam/process/reads.py
src/expam/sandbox/__init__.py
src/expam/sandbox/main.py
src/expam/tree/__init__.py
src/expam/tree/location.py
src/expam/tree/simulate.py
src/expam/tree/sourmash.py
src/expam/tree/tree.py