Metadata-Version: 1.0
Name: exdesi
Version: 0.3
Summary: Design experiments to differentiate interaction graph models.
Home-page: http://bioasp.github.io/exdesi/
Author: Sven Thiele
Author-email: sthiele78@gmail.com
License: GPLv3+
Description: Installation
        ------------
        
        
        You can install exdesi by running::
        
        	$ pip install --user exdesi
        
        On Linux the executable scripts can then be found in ``~/.local/bin``
        and on MacOS the scripts are under ``/Users/YOURUSERNAME/Library/Python/3.2/bin``.
        
        
        
        Usage
        -----
        
        Typical usage is::
        
        	$ exdesi.py candidate_directory experimental_variables_file
        	
        For more options you can ask for help as follows::
        
        	$ exdesi.py -h
        	usage: exdesi.py [-h] [--best_set BEST_SET] [-x EXCLUDE] networkfiles experivarfile
        
        	positional arguments:
        	  networkfiles          directory of influence graphs in SIF format
        	  experivarfile         experimental variables
        
        	optional arguments:
        	  -h, --help            show this help message and exit
        	  --best_set BEST_SET   compute best set of experiments maximal number of
        	                        experiments, default is OFF, 0=unlimited
        	  -x EXCLUDE, --exclude EXCLUDE
        	                        exclude experiments described in file EXCLUDE
        
        
        Example
        -------
        Sample files available in the data_ directory.
        A sample call would be::
        
                $ exdesi.py in_silico_HEK293/candidates_round1/ in_silico_HEK293/expvars.txt -x in_silico_HEK293/exclude1.txt
        
        .. _data: https://github.com/bioasp/exdesi/tree/master/data
        
        
        
Platform: UNKNOWN
