.gitignore
CITATION.cff
LICENSE
README.md
pyproject.toml
requirements.txt
setup.py
.github/workflows/ci.yml
evomotif/__init__.py
evomotif/alignment.py
evomotif/conservation.py
evomotif/motif_discovery.py
evomotif/phylogeny.py
evomotif/pipeline.py
evomotif/retrieval.py
evomotif/stats.py
evomotif/structure.py
evomotif/variants.py
evomotif.egg-info/PKG-INFO
evomotif.egg-info/SOURCES.txt
evomotif.egg-info/dependency_links.txt
evomotif.egg-info/entry_points.txt
evomotif.egg-info/requires.txt
evomotif.egg-info/top_level.txt
examples/01_simple_analysis.py
examples/README.md
examples/example_data/.gitkeep
paper/paper.bib
paper/paper.md
tests/INTEGRATION_TESTING.md
tests/__init__.py
tests/conftest.py
tests/run_complete_analysis.py
tests/run_integration_test.py
tests/test_conservation.py
tests/test_integration.py
tests/test_motif_discovery.py
tests/test_pipeline.py
tests/test_retrieval.py
tests/test_stats.py
tests/test_structure.py