MANIFEST.in
README.md
path_test.txt
requirements.txt
setup.cfg
setup.py
test_setup.txt
EUKulele.egg-info/PKG-INFO
EUKulele.egg-info/SOURCES.txt
EUKulele.egg-info/dependency_links.txt
EUKulele.egg-info/not-zip-safe
EUKulele.egg-info/requires.txt
EUKulele.egg-info/top_level.txt
bin/EUKulele
docs/build/html/_sources/api.rst.txt
docs/build/html/_sources/auxiliaryscripts.rst.txt
docs/build/html/_sources/community.rst.txt
docs/build/html/_sources/databaseandconfig.rst.txt
docs/build/html/_sources/index.rst.txt
docs/build/html/_sources/install.rst.txt
docs/build/html/_sources/outputstructure.rst.txt
docs/build/html/_sources/parameters.rst.txt
docs/build/html/_sources/tutorial.rst.txt
scripts/__init__.py
scripts/after_job.sh
scripts/concatenate_busco.sh
scripts/configure_busco.sh
scripts/coordinate_batch.sh
scripts/create_protein_table.py
scripts/download_database.sh
scripts/install_dependencies.sh
scripts/mag_stats.py
scripts/names_to_reads.py
scripts/query_busco.py
scripts/run_busco.sh
src/__init__.py
src/EUKulele/EUKulele-env.yaml
src/EUKulele/EUKulele_config.py
src/EUKulele/EUKulele_main.py
src/EUKulele/__init__.py
src/EUKulele/busco_runner.py
src/EUKulele/config.yaml
src/EUKulele/config_full.yaml
src/EUKulele/download_database.py
src/EUKulele/manage_steps.py
src/EUKulele/tax_placement.py
src/EUKulele/visualize_results.py
src/EUKulele.egg-info/PKG-INFO
src/EUKulele.egg-info/SOURCES.txt
src/EUKulele.egg-info/dependency_links.txt
src/EUKulele.egg-info/requires.txt
src/EUKulele.egg-info/top_level.txt
src/EUKulele/EUKulele.egg-info/PKG-INFO
src/EUKulele/EUKulele.egg-info/SOURCES.txt
src/EUKulele/EUKulele.egg-info/dependency_links.txt
src/EUKulele/EUKulele.egg-info/requires.txt
src/EUKulele/EUKulele.egg-info/top_level.txt
src/EUKulele/__pycache__/EUKulele_config.cpython-36.pyc
src/EUKulele/__pycache__/EUKulele_main.cpython-36.pyc
src/EUKulele/__pycache__/__init__.cpython-36.pyc
src/EUKulele/__pycache__/tax_placement.cpython-36.pyc
src/EUKulele/__pycache__/visualize_results.cpython-36.pyc
src/EUKulele/static/__init__.py
src/EUKulele/static/busco_config.ini
src/EUKulele/static/config.ini
src/EUKulele/static/config.yaml
src/EUKulele/static/reference_url.yaml
src/EUKulele/static/tax-cutoffs.yaml