__VERSION__="ete2-2.0rev90" 
# #START_LICENSE###########################################################
#
# Copyright (C) 2009 by Jaime Huerta Cepas. All rights reserved.  
# email: jhcepas@gmail.com
#
# This file is part of the Environment for Tree Exploration program (ETE). 
# http://ete.cgenomics.org
#  
# ETE is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#  
# ETE is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#  
# You should have received a copy of the GNU General Public License
# along with ETE.  If not, see <http://www.gnu.org/licenses/>.
#
# #END_LICENSE#############################################################


species_ages = {}

_humanv1 = {
# Basal eukariotes
"Ath":10, # Arabidopsis thaliana
"Cre":10,
"Pfa":10,
"Pyo":10,
"Ddi":10,
"Gth":10,
"Lma":10, # leismania
"Pte":10,

# Fungi
"Ago":9,
"Cal":9,
"Cgl":9,
"Cne":9,
"Dha":9,
"Ecu":9,
"Gze":9,
"Kla":9,
"Ncr":9,
"Sce":9, # S.cerevisiae
"Spb":9,
"Yli":9,

# metazoa non chordates
"Aga":8, # Anopheles
"Dme":8, # Drosophila melanogaster
"Ame":8, # Apis meliferae
"Cel":8, # Caenorabditis elegans
"Cbr":8, # Caenorabditis brigssae

# chordates non vertebrates
"Cin":7, # Ciona intestinalis

# vertebrates non tetrapodes
"Dre":6, # Danio rerio
"Tni":6, # Tetraodom
"Fru":6, # Fugu rubripes

# tetrapodes non birds nor mammals
"Xtr":5, # Xenopus

# birds
"Gga":4, # Chicken

# Mammals non primates
"Mdo":3, # Monodelphis domestica
"Mms":3, # Mouse
"Rno":3, # Rat
"Cfa":3, # Dog
"Bta":3, # Cow

# primates non hominids
"Ptr":2, # chimp
"Mmu":2, # Macaca

# hominids
"Hsa":1, # human
}
species_ages["human_phylome"] = _humanv1
