anndata>=0.6.20
scanpy>=1.4.3
matplotlib>=3.0.0
pandas>=0.21
scipy<=1.3
seaborn
h5py
scikit-learn!=0.21.0,!=0.21.1,>=0.19.1
statsmodels
networkx
natsort
joblib
numba>=0.41.0
bamnostic>=1.0.12
umap-learn>=0.3.0

[bbknn]
bbknn

[combat]
patsy

[doc]
sphinx
sphinx_rtd_theme
sphinx_autodoc_typehints
scanpydoc

[leiden]
python-igraph
leidenalg

[louvain]
python-igraph
louvain>=0.6

[test]
pytest
