README.md
setup.py
epiout/__init__.py
epiout/annotate.py
epiout/annotation_config.py
epiout/autoencoder.py
epiout/dataclasses.py
epiout/dataset.py
epiout/epiout.py
epiout/gene.py
epiout/hic.py
epiout/inject.py
epiout/main.py
epiout/negative_binomial.py
epiout/optimizer.py
epiout/plot.py
epiout/result.py
epiout/sflognorm.py
epiout.egg-info/PKG-INFO
epiout.egg-info/SOURCES.txt
epiout.egg-info/dependency_links.txt
epiout.egg-info/entry_points.txt
epiout.egg-info/requires.txt
epiout.egg-info/top_level.txt
epiout/utils/__init__.py
epiout/utils/common.py
epiout/utils/genomic_features.py
epiout/utils/io.py
epiout/utils/utils.py
tests/test_annotate.py
tests/test_annotation_config.py
tests/test_autoencoder.py
tests/test_counting.py
tests/test_epiout.py
tests/test_gene.py
tests/test_genomic_features.py
tests/test_hic_read.py
tests/test_inject.py
tests/test_linear_autoencoder.py
tests/test_main.py
tests/test_negative_binomial.py
tests/test_optimizer.py
tests/test_sflognorm.py
tests/test_utils.py