ChangeLog.md
INSTALL.md
LICENSE.md
MANIFEST.in
README.md
setup.py
doc/Makefile
doc/README.md
doc/index.html
doc/installation_index.html
doc/jsdoc-config.json
doc/tutorial_index.html
doc/bootstrap/css/bootstrap-theme.min.css
doc/bootstrap/css/bootstrap.min.css
doc/bootstrap/fonts/glyphicons-halflings-regular.eot
doc/bootstrap/fonts/glyphicons-halflings-regular.svg
doc/bootstrap/fonts/glyphicons-halflings-regular.ttf
doc/bootstrap/fonts/glyphicons-halflings-regular.woff
doc/bootstrap/fonts/glyphicons-halflings-regular.woff2
doc/bootstrap/js/bootstrap.min.js
doc/bootstrap/js/jquery-2.2.3.min.js
doc/files/files.zip
doc/img/emperor_heading.png
doc/img/favicon.ico
doc/img/sample_1.png
doc/source/conf.py
doc/source/description.rst
doc/source/examples.rst
doc/source/formats.rst
doc/source/index.rst
doc/source/js_integration.rst
doc/source/_static/copybutton.js
doc/source/_static/style.css
doc/source/_templates/layout.html
doc/source/_templates/autosummary/attribute.rst
doc/source/_templates/autosummary/class.rst
doc/source/_templates/autosummary/method.rst
doc/source/tutorials/animations.rst
doc/source/tutorials/trajectories.png
emperor/__init__.py
emperor/_format_strings.py
emperor/_pandas.py
emperor/core.py
emperor/format.py
emperor/util.py
emperor.egg-info/PKG-INFO
emperor.egg-info/SOURCES.txt
emperor.egg-info/dependency_links.txt
emperor.egg-info/requires.txt
emperor.egg-info/top_level.txt
emperor/qiime_backports/__init__.py
emperor/qiime_backports/make_3d_plots.py
emperor/qiime_backports/util.py
emperor/support_files/README.md
emperor/support_files/css/emperor.css
emperor/support_files/img/emperor.png
emperor/support_files/img/favicon.ico
emperor/support_files/img/pause.png
emperor/support_files/img/play.png
emperor/support_files/img/reset.png
emperor/support_files/js/abc-view-controller.js
emperor/support_files/js/animate.js
emperor/support_files/js/animations-controller.js
emperor/support_files/js/axes-controller.js
emperor/support_files/js/color-editor.js
emperor/support_files/js/color-view-controller.js
emperor/support_files/js/controller.js
emperor/support_files/js/draw.js
emperor/support_files/js/model.js
emperor/support_files/js/multi-model.js
emperor/support_files/js/opacity-view-controller.js
emperor/support_files/js/scale-editor.js
emperor/support_files/js/scale-view-controller.js
emperor/support_files/js/sceneplotview3d.js
emperor/support_files/js/shape-controller.js
emperor/support_files/js/shape-editor.js
emperor/support_files/js/shapes.js
emperor/support_files/js/trajectory.js
emperor/support_files/js/ui-state.js
emperor/support_files/js/util.js
emperor/support_files/js/view-controller.js
emperor/support_files/js/view.js
emperor/support_files/js/visibility-controller.js
emperor/support_files/templates/base-dependencies.html
emperor/support_files/templates/html-container-template.html
emperor/support_files/templates/jupyter-template.html
emperor/support_files/templates/logic-template.html
emperor/support_files/templates/standalone-template.html
emperor/support_files/templates/style-template.html
emperor/support_files/vendor/css/chosen-sprite.png
emperor/support_files/vendor/css/chosen-sprite@2x.png
emperor/support_files/vendor/css/chosen.min.css
emperor/support_files/vendor/css/jquery-ui.min.css
emperor/support_files/vendor/css/jquery.contextMenu.min.css
emperor/support_files/vendor/css/slick.grid.min.css
emperor/support_files/vendor/css/spectrum.min.css
emperor/support_files/vendor/css/font/context-menu-icons.eot
emperor/support_files/vendor/css/font/context-menu-icons.ttf
emperor/support_files/vendor/css/font/context-menu-icons.woff
emperor/support_files/vendor/css/font/context-menu-icons.woff2
emperor/support_files/vendor/css/images/ui-bg_glass_55_fbf9ee_1x400.png
emperor/support_files/vendor/css/images/ui-bg_glass_65_ffffff_1x400.png
emperor/support_files/vendor/css/images/ui-bg_glass_75_dadada_1x400.png
emperor/support_files/vendor/css/images/ui-bg_glass_75_e6e6e6_1x400.png
emperor/support_files/vendor/css/images/ui-bg_glass_95_fef1ec_1x400.png
emperor/support_files/vendor/css/images/ui-bg_highlight-soft_75_cccccc_1x100.png
emperor/support_files/vendor/css/images/ui-bg_highlight-soft_75_ffe45c_1x100.png
emperor/support_files/vendor/css/images/ui-icons_222222_256x240.png
emperor/support_files/vendor/css/images/ui-icons_2e83ff_256x240.png
emperor/support_files/vendor/css/images/ui-icons_454545_256x240.png
emperor/support_files/vendor/css/images/ui-icons_888888_256x240.png
emperor/support_files/vendor/css/images/ui-icons_cd0a0a_256x240.png
emperor/support_files/vendor/js/Blob.js
emperor/support_files/vendor/js/FileSaver.min.js
emperor/support_files/vendor/js/canvas-toBlob.js
emperor/support_files/vendor/js/chosen.jquery.min.js
emperor/support_files/vendor/js/chroma.min.js
emperor/support_files/vendor/js/d3.min.js
emperor/support_files/vendor/js/jquery-2.1.4.min.js
emperor/support_files/vendor/js/jquery-ui.min.js
emperor/support_files/vendor/js/jquery.contextMenu.min.js
emperor/support_files/vendor/js/jquery.event.drag-2.2.min.js
emperor/support_files/vendor/js/jquery.ui.position.min.js
emperor/support_files/vendor/js/require-2.1.22.min.js
emperor/support_files/vendor/js/slick.core.min.js
emperor/support_files/vendor/js/slick.dataview.min.js
emperor/support_files/vendor/js/slick.editors.min.js
emperor/support_files/vendor/js/slick.formatters.min.js
emperor/support_files/vendor/js/slick.grid.min.js
emperor/support_files/vendor/js/spectrum.min.js
emperor/support_files/vendor/js/three.min.js
emperor/support_files/vendor/js/underscore-min.js
emperor/support_files/vendor/js/three.js-plugins/CanvasRenderer.js
emperor/support_files/vendor/js/three.js-plugins/OrbitControls.js
emperor/support_files/vendor/js/three.js-plugins/Projector.js
emperor/support_files/vendor/js/three.js-plugins/SVGRenderer.js
emperor/support_files/vendor/js/three.js-plugins/SelectionBox.js
emperor/support_files/vendor/js/three.js-plugins/SelectionHelper.js
images/emperor-animation.gif
images/emperor-animation.psd
images/emperor-frame1.ai
images/emperor-frame1.png
images/emperor-frame2.ai
images/emperor-frame2.png
images/emperor-frame3.ai
images/emperor-frame3.png
images/emperor-logos.ai
tests/__init__.py
tests/_test_core_strings.py
tests/_test_format_strings.py
tests/all_tests.py
tests/test_core.py
tests/test_format.py
tests/test_pandas.py
tests/test_util.py
tests/javascript_tests/index.html
tests/javascript_tests/runner.js
tests/javascript_tests/test_animate.js
tests/javascript_tests/test_animations_controller.js
tests/javascript_tests/test_axes_controller.js
tests/javascript_tests/test_color_view_controller.js
tests/javascript_tests/test_decomposition_model.js
tests/javascript_tests/test_decomposition_view.js
tests/javascript_tests/test_draw.js
tests/javascript_tests/test_opacity_view_controller.js
tests/javascript_tests/test_plottable.js
tests/javascript_tests/test_scalar_view_controller.js
tests/javascript_tests/test_scale_view_controller.js
tests/javascript_tests/test_sceneplotview3d.js
tests/javascript_tests/test_shape_controller.js
tests/javascript_tests/test_trajectory.js
tests/javascript_tests/test_util.js
tests/javascript_tests/test_view_controller.js
tests/javascript_tests/test_visibility_controller.js
tests/javascript_tests/qunit/qunit-min.css
tests/javascript_tests/qunit/qunit-min.js
tests/scripts_test_data/make_emperor/Fasting_Map.txt
tests/scripts_test_data/make_emperor/Fasting_Map_modified.txt
tests/scripts_test_data/make_emperor/biplot.txt
tests/scripts_test_data/make_emperor/euclidian_pc.txt
tests/scripts_test_data/make_emperor/makefolders.sh
tests/scripts_test_data/make_emperor/otu_table_L3.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc.txt
tests/scripts_test_data/make_emperor/compare/pcoa_unweighted_unifrac_rarefaction_110_0.txt
tests/scripts_test_data/make_emperor/compare/pcoa_unweighted_unifrac_rarefaction_110_1.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_0.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_1.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_2.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_3.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_4.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_5.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_6.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_7.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_8.txt
tests/scripts_test_data/make_emperor/unweighted_unifrac_pc/pcoa_unweighted_unifrac_rarefaction_110_9.txt
tests/test_data/.some-hidden-file
tests/test_data/procrustes_results.txt
tests/test_data/unweighted_unifrac_pc_transformed_reference.txt
tests/test_data/weighted_unifrac_pc_transformed_q1.txt
tests/test_data/dir-with-only-hidden-files/.1.txt
tests/test_data/dir-with-only-hidden-files/.2.txt
tests/test_data/dir-with-only-hidden-files/.3.txt
tests/test_data/dir-with-only-hidden-files/.4.txt
tests/test_qiime_backports/test_make_3d_plots.py
tests/test_qiime_backports/test_util.py