LICENSE
README.md
setup.py
.github/workflows/deploy.yml
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
empanada/__init__.py
empanada/array_utils.py
empanada/config_loaders.py
empanada/consensus.py
empanada/losses.py
empanada/metrics.py
empanada/zarr_utils.py
empanada/data/__init__.py
empanada/data/_base.py
empanada/data/bc_dataset.py
empanada/data/single_class_instance_dataset.py
empanada/data/volume_dataset.py
empanada/data/utils/__init__.py
empanada/data/utils/copy_paste.py
empanada/data/utils/sampler.py
empanada/data/utils/target_creation.py
empanada/data/utils/transforms.py
empanada/evaluation/__init__.py
empanada/evaluation/evaluator.py
empanada/evaluation/instance_metrics.py
empanada/evaluation/panoptic_metrics.py
empanada/evaluation/semantic_metrics.py
empanada/inference/__init__.py
empanada/inference/engines.py
empanada/inference/filters.py
empanada/inference/matcher.py
empanada/inference/postprocess.py
empanada/inference/rle.py
empanada/inference/tracker.py
empanada/inference/watershed.py
empanada/models/__init__.py
empanada/models/blocks.py
empanada/models/heads.py
empanada/models/panoptic_bifpn.py
empanada/models/panoptic_deeplab.py
empanada/models/point_rend.py
empanada/models/decoders/__init__.py
empanada/models/decoders/aspp.py
empanada/models/decoders/bifpn.py
empanada/models/decoders/panoptic_deeplab.py
empanada/models/encoders/__init__.py
empanada/models/encoders/regnet.py
empanada/models/encoders/resnet.py
empanada/models/quantization/__init__.py
empanada/models/quantization/panoptic_bifpn.py
empanada/models/quantization/panoptic_deeplab.py
empanada/models/quantization/point_rend.py
empanada/models/quantization/decoders/__init__.py
empanada/models/quantization/decoders/panoptic_deeplab.py
empanada/models/quantization/encoders/__init__.py
empanada/models/quantization/encoders/regnet.py
empanada/models/quantization/encoders/resnet.py
empanada_dl.egg-info/PKG-INFO
empanada_dl.egg-info/SOURCES.txt
empanada_dl.egg-info/dependency_links.txt
empanada_dl.egg-info/requires.txt
empanada_dl.egg-info/top_level.txt
projects/mitonet/configs/mmm_median_inference.yaml
projects/mitonet/configs/mmm_median_inference_celegans.yaml
projects/mitonet/configs/mmm_median_inference_fly_brain.yaml
projects/mitonet/configs/mmm_median_inference_glycolytic_muscle.yaml
projects/mitonet/configs/mmm_median_inference_hela.yaml
projects/mitonet/configs/mmm_median_inference_lucchi.yaml
projects/mitonet/configs/mmm_panoptic_bifpn_pointrend.yaml
projects/mitonet/configs/mmm_panoptic_deeplab_bc.yaml
projects/mitonet/configs/mmm_panoptic_deeplab_pointrend.yaml
projects/mitonet/configs/mmm_ws_inference_fly_brain.yaml
projects/mitonet/configs/train_ablation/ablation_finetune.yaml
projects/mitonet/configs/train_ablation/ablation_instance_decoder.yaml
projects/mitonet/configs/train_ablation/ablation_point_rend.yaml
projects/mitonet/scripts/evaluate3d.py
projects/mitonet/scripts/evaluate3d_bc.py
projects/mitonet/scripts/legacy_data/crop2d_with_masks.py
projects/mitonet/scripts/legacy_data/deduplicate3d_with_masks.py
projects/mitonet/scripts/legacy_data/filter_nn.py
projects/mitonet/scripts/legacy_data/organize_from_deduplicated.py
projects/mitonet/scripts/zooniverse/create_flipbooks.py
projects/mitonet/scripts/zooniverse/group_tem_segs.py
projects/mitonet/scripts/zooniverse/merge_seg_dirs.py
projects/mitonet/scripts/zooniverse/merge_zoo_segs.py
projects/mitonet/scripts/zooniverse/split_proof_stack.py
scripts/export_model.py
scripts/inference3d.py
scripts/inference3d_multigpu.py
scripts/train.py