emodpy~=3.0
pandas~=3.0
scikit-learn~=1.8
python-calamine~=0.6
emod-hiv==2.30.0

[docs]
sphinxext.remoteliteralinclude~=0.4.0
sphinx
pydata-sphinx-theme
sphinxcontrib-programoutput~=0.17
nbsphinx~=0.9
jupyterlab~=4.0
myst-parser~=2.0
readthedocs-sphinx-search~=0.3
sphinx-copybutton~=0.5
pygithub~=1.57
sphinxcontrib-jquery~=4.1
chardet<6.0.0

[lint]
flake8

[test]
pytest
pytest-xdist
pytest-runner
pytest-timeout
pytest-cache
coverage
py-make
pillow
snakemake
