.compile_mod.sh
.gitignore
.pylintrc
.readthedocs.yml
.zenodo.json
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
COPYING
LICENSE.txt
MANIFEST.in
Makefile
README.rst
requirements_docs.txt
setup.py
tox.ini
.github/workflows/build.yml
.github/workflows/keep-alive.yml
.github/workflows/test.yml
EModelRunner.egg-info/PKG-INFO
EModelRunner.egg-info/SOURCES.txt
EModelRunner.egg-info/dependency_links.txt
EModelRunner.egg-info/requires.txt
EModelRunner.egg-info/top_level.txt
doc/Makefile
doc/source/api.rst
doc/source/changelog.rst
doc/source/conf.py
doc/source/index.rst
doc/source/images/GUI_screenshot.png
doc/source/logo/BBP-eModelRunner.jpg
emodelrunner/GUI.py
emodelrunner/__init__.py
emodelrunner/cell.py
emodelrunner/create_cells.py
emodelrunner/create_hoc.py
emodelrunner/create_hoc_tools.py
emodelrunner/create_recordings.py
emodelrunner/create_stimuli.py
emodelrunner/features.py
emodelrunner/json_utilities.py
emodelrunner/load.py
emodelrunner/locations.py
emodelrunner/output.py
emodelrunner/parsing_utilities.py
emodelrunner/recordings.py
emodelrunner/run.py
emodelrunner/run_pairsim.py
emodelrunner/run_synplas.py
emodelrunner/stimuli.py
emodelrunner/synplas_analysis.py
emodelrunner/GUI_utils/__init__.py
emodelrunner/GUI_utils/frames.py
emodelrunner/GUI_utils/interface.py
emodelrunner/GUI_utils/plotshape.py
emodelrunner/GUI_utils/simulator.py
emodelrunner/GUI_utils/style.py
emodelrunner/configuration/__init__.py
emodelrunner/configuration/configparser.py
emodelrunner/configuration/subgroups.py
emodelrunner/configuration/validator.py
emodelrunner/factsheets/__init__.py
emodelrunner/factsheets/experimental_features.py
emodelrunner/factsheets/ion_channel_mechanisms.py
emodelrunner/factsheets/morphology_features.py
emodelrunner/factsheets/output.py
emodelrunner/factsheets/physiology_features.py
emodelrunner/factsheets/units.py
emodelrunner/morphology/__init__.py
emodelrunner/morphology/builder.py
emodelrunner/morphology/morphology.py
emodelrunner/protocols/__init__.py
emodelrunner/protocols/create_protocols.py
emodelrunner/protocols/protocols_func.py
emodelrunner/protocols/reader.py
emodelrunner/protocols/sscx_protocols.py
emodelrunner/protocols/synplas_protocols.py
emodelrunner/protocols/thalamus_protocols.py
emodelrunner/synapses/__init__.py
emodelrunner/synapses/create_locations.py
emodelrunner/synapses/glusynapse.py
emodelrunner/synapses/mechanism.py
emodelrunner/synapses/minis.py
emodelrunner/synapses/recordings.py
emodelrunner/synapses/stimuli.py
emodelrunner/synapses/synapse.py
examples/sscx_sample_dir/LICENSE.txt
examples/sscx_sample_dir/LICENSE_CC-BY-CA-SA-4.0
examples/sscx_sample_dir/__init__.py
examples/sscx_sample_dir/run_hoc.sh
examples/sscx_sample_dir/run_py.sh
examples/sscx_sample_dir/config/config_allsteps.ini
examples/sscx_sample_dir/config/config_factsheets.ini
examples/sscx_sample_dir/config/config_multiprotocols.ini
examples/sscx_sample_dir/config/config_recipe_protocols.ini
examples/sscx_sample_dir/config/config_singlestep.ini
examples/sscx_sample_dir/config/config_synapses.ini
examples/sscx_sample_dir/config/config_synapses_short.ini
examples/sscx_sample_dir/config/features/cADpyr_L4PC.json
examples/sscx_sample_dir/config/params/final.json
examples/sscx_sample_dir/config/params/pyr.json
examples/sscx_sample_dir/config/protocols/RmpRiTau.json
examples/sscx_sample_dir/config/protocols/allsteps.json
examples/sscx_sample_dir/config/protocols/cADpyr_L4PC.json
examples/sscx_sample_dir/config/protocols/multiprotocols.json
examples/sscx_sample_dir/config/protocols/singlestep.json
examples/sscx_sample_dir/config/protocols/synapses.json
examples/sscx_sample_dir/config/protocols/synapses_short.json
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examples/sscx_sample_dir/mechanisms/CaDynamics_DC0.mod
examples/sscx_sample_dir/mechanisms/Ca_HVA2.mod
examples/sscx_sample_dir/mechanisms/Ca_LVAst.mod
examples/sscx_sample_dir/mechanisms/Ih.mod
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examples/sscx_sample_dir/mechanisms/K_Tst.mod
examples/sscx_sample_dir/mechanisms/KdShu2007.mod
examples/sscx_sample_dir/mechanisms/NaTg.mod
examples/sscx_sample_dir/mechanisms/Nap_Et2.mod
examples/sscx_sample_dir/mechanisms/ProbAMPANMDA_EMS.mod
examples/sscx_sample_dir/mechanisms/ProbGABAAB_EMS.mod
examples/sscx_sample_dir/mechanisms/SK_E2.mod
examples/sscx_sample_dir/mechanisms/SKv3_1.mod
examples/sscx_sample_dir/mechanisms/StochKv3.mod
examples/sscx_sample_dir/mechanisms/VecStim.mod
examples/sscx_sample_dir/mechanisms/notes.txt
examples/sscx_sample_dir/morphology/dend-C231296A-P4B2_axon-C200897C-P2_-_Scale_x1.000_y0.975_z1.000.asc
examples/sscx_sample_dir/python_recordings/.keep
examples/sscx_sample_dir/synapses/mtype_map.tsv
examples/sscx_sample_dir/synapses/synapses.tsv
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examples/sscx_sample_dir/templates/cell_template_neurodamus.jinja2
examples/sscx_sample_dir/templates/createsimulation.jinja2
examples/sscx_sample_dir/templates/features.hoc
examples/sscx_sample_dir/templates/main_protocol.jinja2
examples/sscx_sample_dir/templates/replace_axon_hoc.hoc
examples/sscx_sample_dir/templates/run_hoc.jinja2
examples/sscx_sample_dir/templates/synapses.jinja2
examples/synplas_sample_dir/LICENSE.txt
examples/synplas_sample_dir/LICENSE_CC-BY-CA-SA-4.0
examples/synplas_sample_dir/run.sh
examples/synplas_sample_dir/run_pairsim.sh
examples/synplas_sample_dir/config/config_1Hz_10ms.ini
examples/synplas_sample_dir/config/fit_params.json
examples/synplas_sample_dir/config/params/final.json
examples/synplas_sample_dir/config/params/pyr.json
examples/synplas_sample_dir/mechanisms/CaDynamics_DC0.mod
examples/synplas_sample_dir/mechanisms/Ca_HVA2.mod
examples/synplas_sample_dir/mechanisms/Ca_LVAst.mod
examples/synplas_sample_dir/mechanisms/DetAMPANMDA.mod
examples/synplas_sample_dir/mechanisms/DetGABAAB.mod
examples/synplas_sample_dir/mechanisms/GluSynapse.mod
examples/synplas_sample_dir/mechanisms/Ih.mod
examples/synplas_sample_dir/mechanisms/K_Pst.mod
examples/synplas_sample_dir/mechanisms/K_Tst.mod
examples/synplas_sample_dir/mechanisms/KdShu2007.mod
examples/synplas_sample_dir/mechanisms/NaTg.mod
examples/synplas_sample_dir/mechanisms/Nap_Et2.mod
examples/synplas_sample_dir/mechanisms/ProbAMPANMDA_EMS.mod
examples/synplas_sample_dir/mechanisms/ProbGABAAB_EMS.mod
examples/synplas_sample_dir/mechanisms/SK_E2.mod
examples/synplas_sample_dir/mechanisms/SKv3_1.mod
examples/synplas_sample_dir/mechanisms/StochKv3.mod
examples/synplas_sample_dir/mechanisms/TTXDynamicsSwitch.mod
examples/synplas_sample_dir/mechanisms/VecStim.mod
examples/synplas_sample_dir/mechanisms/gap.mod
examples/synplas_sample_dir/mechanisms/netstim_inhpoisson.mod
examples/synplas_sample_dir/mechanisms/optimized/ProbAMPANMDA_EMS.mod
examples/synplas_sample_dir/mechanisms/optimized/ProbGABAAB_EMS.mod
examples/synplas_sample_dir/morphology/dend-C120398A-P3_axon-sm100429a1-5_INT_idG_-_Scale_x1.000_y0.975_z1.000.asc
examples/synplas_sample_dir/morphology/dend-sm100429a1-5_INT_idG_axon-sm100429a1-5_INT_idE_-_Scale_x1.000_y0.950_z1.000_-_Clone_0.asc
examples/synplas_sample_dir/protocols/spiketrain_1Hz_10ms.dat
examples/synplas_sample_dir/protocols/stimuli_1Hz.json
examples/synplas_sample_dir/synapses/cpre_cpost.json
examples/synplas_sample_dir/synapses/mtype_map.tsv
examples/synplas_sample_dir/synapses/syn_extra_params.json
examples/synplas_sample_dir/synapses/synapse_properties.json
examples/synplas_sample_dir/synapses/synapses.tsv
examples/synplas_sample_dir/synapses/synconf.txt
examples/thalamus_sample_dir/LICENSE.txt
examples/thalamus_sample_dir/LICENSE_CC-BY-CA-SA-4.0
examples/thalamus_sample_dir/cell_info.json
examples/thalamus_sample_dir/compile_mechanisms.sh
examples/thalamus_sample_dir/run_py.sh
examples/thalamus_sample_dir/config/config_recipe_prots_short.ini
examples/thalamus_sample_dir/config/features/dNAD_ltb.json
examples/thalamus_sample_dir/config/params/bAC_TC_VPL.json
examples/thalamus_sample_dir/config/params/final.json
examples/thalamus_sample_dir/config/protocols/dNAD_ltb_short.json
examples/thalamus_sample_dir/mechanisms/CaDynamics_DC0.mod
examples/thalamus_sample_dir/mechanisms/Ca_HVA.mod
examples/thalamus_sample_dir/mechanisms/Ca_HVA2.mod
examples/thalamus_sample_dir/mechanisms/Ca_LVAst.mod
examples/thalamus_sample_dir/mechanisms/Ih.mod
examples/thalamus_sample_dir/mechanisms/K_Pst.mod
examples/thalamus_sample_dir/mechanisms/K_Tst.mod
examples/thalamus_sample_dir/mechanisms/KdShu2007.mod
examples/thalamus_sample_dir/mechanisms/NaTg.mod
examples/thalamus_sample_dir/mechanisms/Nap_Et2.mod
examples/thalamus_sample_dir/mechanisms/SK_E2.mod
examples/thalamus_sample_dir/mechanisms/SKv3_1.mod
examples/thalamus_sample_dir/mechanisms/StochKv3.mod
examples/thalamus_sample_dir/mechanisms/TC_HH.mod
examples/thalamus_sample_dir/mechanisms/TC_ITGHK.mod
examples/thalamus_sample_dir/mechanisms/TC_ITGHK_Ama14.mod
examples/thalamus_sample_dir/mechanisms/TC_ITGHK_Des98.mod
examples/thalamus_sample_dir/mechanisms/TC_Ih.mod
examples/thalamus_sample_dir/mechanisms/TC_Ih_Bud97.mod
examples/thalamus_sample_dir/mechanisms/TC_KCa_bk.mod
examples/thalamus_sample_dir/mechanisms/TC_Kir2_2.mod
examples/thalamus_sample_dir/mechanisms/TC_Kleak.mod
examples/thalamus_sample_dir/mechanisms/TC_NaP.mod
examples/thalamus_sample_dir/mechanisms/TC_Naleak.mod
examples/thalamus_sample_dir/mechanisms/TC_Nap_Et2.mod
examples/thalamus_sample_dir/mechanisms/TC_cadecay.mod
examples/thalamus_sample_dir/mechanisms/TC_iA.mod
examples/thalamus_sample_dir/mechanisms/TC_iA_old.mod
examples/thalamus_sample_dir/mechanisms/TC_iL.mod
examples/thalamus_sample_dir/mechanisms/TC_ic.mod
examples/thalamus_sample_dir/mechanisms/TC_ih2.mod
examples/thalamus_sample_dir/mechanisms/TC_kahp.mod
examples/thalamus_sample_dir/mechanisms/TC_kir_Con15.mod
examples/thalamus_sample_dir/mechanisms/ican.mod
examples/thalamus_sample_dir/mechanisms/other_versions/IKCa.mod
examples/thalamus_sample_dir/mechanisms/other_versions/NaTg.mod
examples/thalamus_sample_dir/mechanisms/other_versions/Nap_Et2.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_ITGHK.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_ITGHK_Ama14.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_ITGHK_Wei2011.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_Ih.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_KCa_bk.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_Kir2_2.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_NaP.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_iA_old.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_ic.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_ih2.mod
examples/thalamus_sample_dir/mechanisms/other_versions/TC_kahp.mod
examples/thalamus_sample_dir/mechanisms/other_versions/caidL.mod
examples/thalamus_sample_dir/morphology/dend-jy180118_C_idD_axon-AA0318_-_Scale_x1.000_y1.050_z1.000.asc
examples/thalamus_sample_dir/python_recordings/.gitkeep
examples/thalamus_sample_dir/synapses/.gitkeep