Metadata-Version: 2.1
Name: emmaa
Version: 1.1.0
Summary: Ecosystem of Machine-maintained Models with Automated Analysis
Home-page: https://github.com/indralab/emmaa
Author: EMMAA developers, Harvard Medical School
Author-email: benjamin_gyori@hms.harvard.edu
License: UNKNOWN
Description: # EMMAA
        EMMAA is an Ecosystem of Machine-maintained Models with Automated Analysis.
        
        ## Documentation
        For a detailed documentation of EMMA, visit http://emmaa.readthedocs.io
        
        ## Concept
        The main idea behind EMMAA is to create a set of computational models that
        are kept up-to-date using automated machine reading, knowledge-assembly, and
        model generation. Each model starts with a prior network of relevant concepts
        connected through a set of known mechanisms. This set of mechanisms is then
        extended by reading literature or other sources of information each day,
        determining how new information relates to the existing model, and then
        updating the model with the new information.
        
        Models are also available for automated analysis in which relevant queries
        that fall within the scope of each model can be automatically mapped
        to structural and dynamical analysis procedures on the model. This allows
        recognizing and reporting changes to the model that result in meaningful
        changes to analysis results.
        
        ## Applications
        The primary application area of EMMAA is the molecular biology of cancer,
        however, it can be applied to other domains that the INDRA system and the
        reading systems integrated with INDRA can handle.
        
        ## Installation
        The primary dependency of EMMAA is INDRA which can be installed using pip.
        Depending on the application, third-party dependencies of INDRA may need
        to be installed and configured separately.
        
        ## Funding
        The development of EMMAA is funded under the DARPA Automating Scientific
        Knowledge Extraction (ASKE) program.
        
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Description-Content-Type: text/markdown
