Metadata-Version: 2.1
Name: elongation_simulators
Version: 1.0.5
Summary: High-performance Ribosome simulator and elongation simulator for eukaryotic organism
Home-page: https://github.com/fheday/elongation_simulator/
Author: Fabio Hedayioglu
Author-email: fheday@gmail.com
Maintainer: Fabio Hedayioglu
Maintainer-email: fheday@gmail.com
License: MIT License
Keywords: elongation translation
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: C++
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python
License-File: LICENSE
Requires-Dist: pybind11
Requires-Dist: pytest
Requires-Dist: numpy
Requires-Dist: pyqt5

This package is composed of two high-performance simulators:

A Ribosome simulator, that, given a codon and tRNA concentrations, simulates the internal reactions of the ribosome and their times. It can produce complete data about these reacions: The state of the ribosome, the time it took for each reaction to happen, their frequency, etc.

The other simulator is an elongation simulator: it simulates ribosomes intiating, elongating and terminating a given mRNA. It simulates collisions, ribosome stalling, etc. This tool can also perform simulations in parallel and produce complete information about all ribosomes, and their positions in the mRNA contruct.


Changes
-------

1.0.0 (unreleased)
~~~~~~~~~~~~~~~~~~
initial release
