LICENSE.md
Makefile
README.md
setup.cfg
setup.py
./LICENSE.md
./README.md
bin/aws-create-elastic-blast-janitor-role.sh
bin/aws-delete-elastic-blast-janitor-role.sh
bin/aws-describe-elastic-blast-janitor-role.sh
bin/aws-get-auto-scaling-events.sh
bin/aws-show-my-undeleted-searches.sh
bin/blast-tuner.py
bin/cleanup-stale-gcp-resources.py
bin/create-blastdb-metadata.py
bin/elastic-blast
bin/elb-cost.py
bin/fasta_split.py
bin/gcp-setup-elastic-blast-janitor.sh
bin/gcp-show-my-undeleted-searches.sh
bin/gcp_ram_size.py
bin/results2clustername.sh
requirements/base.txt
requirements/test.txt
share/etc/elastic-blast-aws-iam-policy.json.template
share/etc/elb-aws-blastn-chicken-gut-metagenome.ini
share/etc/elb-aws-blastn-corrupted-db.ini
share/etc/elb-aws-blastn-custom-db.ini
share/etc/elb-aws-blastn-multiple-query-files.ini
share/etc/elb-aws-blastn-neg-taxidfiltering.ini
share/etc/elb-aws-blastn-non-default-params.ini
share/etc/elb-aws-blastn-nopal-transcriptome.ini
share/etc/elb-aws-blastn-nt-16-spot-nodes.ini
share/etc/elb-aws-blastn-nt-8-nodes.ini
share/etc/elb-aws-blastn-out-of-memory-db-download.ini
share/etc/elb-aws-blastn-out-of-memory.ini
share/etc/elb-aws-blastn-pdbnt-all-azs-provided.ini
share/etc/elb-aws-blastn-pdbnt-auto-shutdown.ini
share/etc/elb-aws-blastn-pdbnt-s3-query-create-resources-small-instance.ini
share/etc/elb-aws-blastn-pdbnt-s3-query-create-resources.ini
share/etc/elb-aws-blastn-pdbnt.ini
share/etc/elb-aws-blastn-refseq_rna-nvme.ini
share/etc/elb-aws-blastn-taxidfiltering.ini
share/etc/elb-aws-blastp-dark-matter-nvme-4-jobs.ini
share/etc/elb-aws-blastp-dark-matter-nvme.ini
share/etc/elb-aws-blastp-dark-matter-optimal-spot.ini
share/etc/elb-aws-blastp-dark-matter.ini
share/etc/elb-aws-blastp-nopal-transcriptome.ini
share/etc/elb-aws-blastp-nr-s3-query-create-resources.ini
share/etc/elb-aws-blastp-nr-small-dark-matter.ini
share/etc/elb-aws-blastx-jaersn01.ini
share/etc/elb-aws-blastx-nopal-transcriptome.ini
share/etc/elb-aws-blastx-nr-jaers-wgs.ini
share/etc/elb-aws-contam.ini
share/etc/elb-aws-megablast-sra-spots.ini
share/etc/elb-aws-megablast-vht1.ini
share/etc/elb-aws-rpstblastn-five-example.ini
share/etc/elb-aws-split-only-ebs-mane.ini
share/etc/elb-aws-split-only-ebs-vht2.ini
share/etc/elb-aws-split-only-ebs-viralmeta.ini
share/etc/elb-aws-split-only-local-ssd-mane.ini
share/etc/elb-aws-split-only-local-ssd-vht2.ini
share/etc/elb-aws-split-only-local-ssd-viralmeta.ini
share/etc/elb-aws-spot-optimal-instance-type-blastn-pdbnt.ini
share/etc/elb-aws-viralmetagenomes-vs-nr.ini
share/etc/elb-blastdb-download-test.template
share/etc/elb-blastn-chicken-gut-metagenome-autoscale.ini
share/etc/elb-blastn-custom-db.ini
share/etc/elb-blastn-multiple-query-files.ini
share/etc/elb-blastn-neg-taxidfiltering.ini
share/etc/elb-blastn-nopal-transcriptome.ini
share/etc/elb-blastn-nt-coronaviridae.ini
share/etc/elb-blastn-nt-eb239.ini
share/etc/elb-blastn-nt.ini
share/etc/elb-blastn-pdbnt-autoscale.ini
share/etc/elb-blastn-pdbnt-k8s-too-many-jobs.ini
share/etc/elb-blastn-pdbnt-local-ssd.ini
share/etc/elb-blastn-pdbnt.ini
share/etc/elb-blastn-taxidfiltering.ini
share/etc/elb-blastp-nopal-transcriptome.ini
share/etc/elb-blastp-nr-eb239.ini
share/etc/elb-blastp-nr-viral-metagenome.ini
share/etc/elb-blastp-nr.ini
share/etc/elb-blastp-swissprot.ini
share/etc/elb-blastx-nopal-transcriptome.ini
share/etc/elb-blastx-nr-WB4_2_0811.ini
share/etc/elb-psiblast-nr.ini
share/etc/elb-psiblast-swissprot.ini
share/etc/elb-rpsblast-amr.ini
share/etc/elb-rpsblast-split-cdd.ini
share/etc/elb-rpstblastn-WB4_2_0811.ini
share/etc/elb-rpstblastn-cdd.ini
share/etc/elb-rpstblastn-five-example.ini
share/etc/elb-slava-blastp-nr.ini
share/etc/elb-tblastn-nt-viral-metagenome.ini
share/etc/elb-tblastx-virusrep.ini
share/etc/elb-user-taxidlist
share/etc/elb-vadims-blastn-nt.ini
share/etc/yamllint-config.yaml
share/test/Makefile
share/test/cloud-split-test.sh
share/test/elb-vs-local-blast-regression-test.sh
share/test/job-get-blast-version.yaml
share/test/job-show-blastdbs.yaml
share/test/job-show-queries.yaml
share/test/pd-scalability-tests.sh
share/test/sanity-check-pdbnt-search-local-unsplit-query-vs-elastic-blast.sh
share/test/sanity-check-pdbnt-search-local-vs-elastic-blast.sh
share/test/show-get-available-blastdb.yaml
share/test/test-k8s-versions.sh
share/tools/aws-create-instance-with-custom-instance-profile.sh
share/tools/aws-delete-instance-with-custom-instance-profile.sh
share/tools/aws-elastic-blast-number-of-nodes.sh
share/tools/aws-list-az.sh
share/tools/aws-list-vpc.sh
share/tools/aws-policy-create.sh
share/tools/aws-policy-delete.sh
share/tools/aws-policy-describe.sh
share/tools/aws-role-create.sh
share/tools/aws-role-delete.sh
share/tools/aws-role-describe.sh
share/tools/aws-test-instance-with-custom-instance-profile.sh
share/tools/deploy-elastic-blast-docs.sh
share/tools/elastic-blast-completion.bash
share/tools/gcp-create-svc-acct.sh
share/tools/gcp-delete-svc-acct.sh
share/tools/iam-policy-patcher.py
share/tools/impersonate-tc.sh
share/tools/loc.sh
share/tools/paper-case-study-submit-blastn-eudicotyledons.sh
share/tools/paper-case-study-submit-blastn-non-eudicotyledons.sh
share/tools/paper-case-study-submit-megablast-eudicotyledons.sh
share/tools/paper-case-study-submit-megablast-non-eudicotyledons.sh
share/tools/pin-python-versions-for-release.sh
share/tools/query-analyzer.sh
share/tools/release-to-github.sh
share/tools/run-report.py
share/tools/test-gcp-permissions/.gitignore
share/tools/test-gcp-permissions/Makefile
share/tools/test-gcp-permissions/requirements.txt
share/tools/test-gcp-permissions/test-gcp-permissions.py
src/elastic_blast/__init__.py
src/elastic_blast/aws.py
src/elastic_blast/aws_traits.py
src/elastic_blast/base.py
src/elastic_blast/config.py
src/elastic_blast/constants.py
src/elastic_blast/cost.py
src/elastic_blast/db_metadata.py
src/elastic_blast/elasticblast.py
src/elastic_blast/elasticblast_factory.py
src/elastic_blast/elb_config.py
src/elastic_blast/filehelper.py
src/elastic_blast/gcp.py
src/elastic_blast/gcp_traits.py
src/elastic_blast/janitor.py
src/elastic_blast/jobs.py
src/elastic_blast/kubernetes.py
src/elastic_blast/object_storage_utils.py
src/elastic_blast/split.py
src/elastic_blast/subst.py
src/elastic_blast/taxonomy.py
src/elastic_blast/tuner.py
src/elastic_blast/util.py
src/elastic_blast.egg-info/PKG-INFO
src/elastic_blast.egg-info/SOURCES.txt
src/elastic_blast.egg-info/dependency_links.txt
src/elastic_blast.egg-info/not-zip-safe
src/elastic_blast.egg-info/requires.txt
src/elastic_blast.egg-info/top_level.txt
src/elastic_blast/commands/__init__.py
src/elastic_blast/commands/delete.py
src/elastic_blast/commands/run_summary.py
src/elastic_blast/commands/status.py
src/elastic_blast/commands/submit.py
src/elastic_blast/resources/__init__.py
src/elastic_blast/resources/quotas/__init__.py
src/elastic_blast/resources/quotas/quota_aws_batch.py
src/elastic_blast/resources/quotas/quota_aws_ec2_cf.py
src/elastic_blast/resources/quotas/quota_check.py
src/elastic_blast/templates/blast-batch-job-local-ssd.yaml.template
src/elastic_blast/templates/blast-batch-job.yaml.template
src/elastic_blast/templates/cloudformation-admin-iam.yaml
src/elastic_blast/templates/elastic-blast-cf.yaml
src/elastic_blast/templates/elastic-blast-janitor-cf.yaml
src/elastic_blast/templates/elb-janitor-cronjob.yaml.template
src/elastic_blast/templates/elb-janitor-rbac.yaml
src/elastic_blast/templates/job-cloud-split-local-ssd.yaml.template
src/elastic_blast/templates/job-init-local-ssd.yaml.template
src/elastic_blast/templates/job-init-pv.yaml.template
src/elastic_blast/templates/job-submit-jobs.yaml.template
src/elastic_blast/templates/pvc-rom.yaml.template
src/elastic_blast/templates/pvc-rwo.yaml.template
src/elastic_blast/templates/storage-gcp-ssd.yaml
src/elastic_blast/templates/storage-gcp.yaml
src/elastic_blast/templates/volume-snapshot-class.yaml
src/elastic_blast/templates/volume-snapshot.yaml