README.md
download_eggnog_data.py
emapper.py
hmm_mapper.py
hmm_server.py
hmm_worker.py
setup.py
eggnog_mapper.egg-info/PKG-INFO
eggnog_mapper.egg-info/SOURCES.txt
eggnog_mapper.egg-info/dependency_links.txt
eggnog_mapper.egg-info/top_level.txt
eggnogmapper/__init__.py
eggnogmapper/common.py
eggnogmapper/emapper.py
eggnogmapper/emapperException.py
eggnogmapper/hmm_mapper.py
eggnogmapper/utils.py
eggnogmapper/vars.py
eggnogmapper/version.py
eggnogmapper/annotation/__init__.py
eggnogmapper/annotation/annota.py
eggnogmapper/annotation/annota_mongo.py
eggnogmapper/annotation/annotator.py
eggnogmapper/annotation/annotators.py
eggnogmapper/annotation/cache_annotator.py
eggnogmapper/annotation/db_sqlite.py
eggnogmapper/annotation/orthologs.py
eggnogmapper/annotation/output.py
eggnogmapper/annotation/ncbitaxa/__init__.py
eggnogmapper/annotation/ncbitaxa/ncbiquery.py
eggnogmapper/annotation/pfam/__init__.py
eggnogmapper/annotation/pfam/pfam.py
eggnogmapper/annotation/pfam/pfam_common.py
eggnogmapper/annotation/pfam/pfam_denovo.py
eggnogmapper/annotation/pfam/pfam_modes.py
eggnogmapper/annotation/pfam/pfam_scan.py
eggnogmapper/annotation/pfam/pfam_search.py
eggnogmapper/genepred/__init__.py
eggnogmapper/genepred/genepred_modes.py
eggnogmapper/genepred/prodigal.py
eggnogmapper/genepred/util.py
eggnogmapper/search/__init__.py
eggnogmapper/search/search_modes.py
eggnogmapper/search/diamond/__init__.py
eggnogmapper/search/diamond/diamond.py
eggnogmapper/search/hmmer/__init__.py
eggnogmapper/search/hmmer/hmmer.py
eggnogmapper/search/hmmer/hmmer_idmap.py
eggnogmapper/search/hmmer/hmmer_overlaps.py
eggnogmapper/search/hmmer/hmmer_search.py
eggnogmapper/search/hmmer/hmmer_search_hmmpgmd.py
eggnogmapper/search/hmmer/hmmer_seqio.py
eggnogmapper/search/hmmer/hmmer_server.py
eggnogmapper/search/hmmer/hmmer_setup.py
eggnogmapper/search/mmseqs/__init__.py
eggnogmapper/search/mmseqs/mmseqs.py
tests/__init__.py
tests/integration/__init__.py
tests/integration/common.py
tests/integration/test.py
tests/integration/test_hmm_mapper.py
tests/unit/__init__.py
tests/unit/tests_search_diamond.py