MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
conda/meta.yaml
eFISHent/__init__.py
eFISHent/__main__.py
eFISHent/alignment.py
eFISHent/analyze.py
eFISHent/basic_filtering.py
eFISHent/cleanup.py
eFISHent/cli.py
eFISHent/config.py
eFISHent/constants.py
eFISHent/generate_probes.py
eFISHent/indexing.py
eFISHent/kmers.py
eFISHent/optimization.py
eFISHent/prepare_sequence.py
eFISHent/secondary_structure.py
eFISHent/util.py
eFISHent.egg-info/PKG-INFO
eFISHent.egg-info/SOURCES.txt
eFISHent.egg-info/dependency_links.txt
eFISHent.egg-info/entry_points.txt
eFISHent.egg-info/not-zip-safe
eFISHent.egg-info/requires.txt
eFISHent.egg-info/top_level.txt
eFISHent/data_tables/b-test.coaxial.dg
eFISHent/data_tables/b-test.coaxial.dh
eFISHent/data_tables/b-test.coaxstack.dg
eFISHent/data_tables/b-test.coaxstack.dh
eFISHent/data_tables/b-test.dangle.dg
eFISHent/data_tables/b-test.dangle.dh
eFISHent/data_tables/b-test.dynalignmiscloop.dg
eFISHent/data_tables/b-test.hexaloop.dg
eFISHent/data_tables/b-test.hexaloop.dh
eFISHent/data_tables/b-test.int11.dg
eFISHent/data_tables/b-test.int11.dh
eFISHent/data_tables/b-test.int21.dg
eFISHent/data_tables/b-test.int21.dh
eFISHent/data_tables/b-test.int22.dg
eFISHent/data_tables/b-test.int22.dh
eFISHent/data_tables/b-test.loop.dg
eFISHent/data_tables/b-test.miscloop.dg
eFISHent/data_tables/b-test.miscloop.dh
eFISHent/data_tables/b-test.specification.dat
eFISHent/data_tables/b-test.stack.dg
eFISHent/data_tables/b-test.stack.dh
eFISHent/data_tables/b-test.tloop.dg
eFISHent/data_tables/b-test.tloop.dh
eFISHent/data_tables/b-test.triloop.dg
eFISHent/data_tables/b-test.triloop.dh
eFISHent/data_tables/b-test.tstack.dg
eFISHent/data_tables/b-test.tstack.dh
eFISHent/data_tables/b-test.tstackcoax.dg
eFISHent/data_tables/b-test.tstackcoax.dh
eFISHent/data_tables/b-test.tstackh.dg
eFISHent/data_tables/b-test.tstackh.dh
eFISHent/data_tables/b-test.tstacki.dg
eFISHent/data_tables/b-test.tstacki.dh
eFISHent/data_tables/b-test.tstacki1n.dg
eFISHent/data_tables/b-test.tstacki1n.dh
eFISHent/data_tables/b-test.tstacki23.dg
eFISHent/data_tables/b-test.tstacki23.dh
eFISHent/data_tables/b-test.tstackm.dg
eFISHent/data_tables/b-test.tstackm.dh
eFISHent/data_tables/coaxial.dat
eFISHent/data_tables/coaxial.dh
eFISHent/data_tables/coaxstack.dat
eFISHent/data_tables/coaxstack.dh
eFISHent/data_tables/dangle.dat
eFISHent/data_tables/dangle.dh
eFISHent/data_tables/design.DNA.Helices.dat
eFISHent/data_tables/design.DNA.Loops.dat
eFISHent/data_tables/design.RNA.Helices.dat
eFISHent/data_tables/design.RNA.Loops.dat
eFISHent/data_tables/dna.coaxial.dg
eFISHent/data_tables/dna.coaxial.dh
eFISHent/data_tables/dna.coaxstack.dg
eFISHent/data_tables/dna.coaxstack.dh
eFISHent/data_tables/dna.dangle.dg
eFISHent/data_tables/dna.dangle.dh
eFISHent/data_tables/dna.dynalignmiscloop.dg
eFISHent/data_tables/dna.dynalignmiscloop.dh
eFISHent/data_tables/dna.hexaloop.dg
eFISHent/data_tables/dna.hexaloop.dh
eFISHent/data_tables/dna.int11.dg
eFISHent/data_tables/dna.int11.dh
eFISHent/data_tables/dna.int21.dg
eFISHent/data_tables/dna.int21.dh
eFISHent/data_tables/dna.int22.dg
eFISHent/data_tables/dna.int22.dh
eFISHent/data_tables/dna.loop.dg
eFISHent/data_tables/dna.loop.dh
eFISHent/data_tables/dna.miscloop.dg
eFISHent/data_tables/dna.miscloop.dh
eFISHent/data_tables/dna.specification.dat
eFISHent/data_tables/dna.stack.dg
eFISHent/data_tables/dna.stack.dh
eFISHent/data_tables/dna.tloop.dg
eFISHent/data_tables/dna.tloop.dh
eFISHent/data_tables/dna.triloop.dg
eFISHent/data_tables/dna.triloop.dh
eFISHent/data_tables/dna.tstack.dg
eFISHent/data_tables/dna.tstack.dh
eFISHent/data_tables/dna.tstackcoax.dg
eFISHent/data_tables/dna.tstackcoax.dh
eFISHent/data_tables/dna.tstackh.dg
eFISHent/data_tables/dna.tstackh.dh
eFISHent/data_tables/dna.tstacki.dg
eFISHent/data_tables/dna.tstacki.dh
eFISHent/data_tables/dna.tstacki1n.dg
eFISHent/data_tables/dna.tstacki1n.dh
eFISHent/data_tables/dna.tstacki23.dg
eFISHent/data_tables/dna.tstacki23.dh
eFISHent/data_tables/dna.tstackm.dg
eFISHent/data_tables/dna.tstackm.dh
eFISHent/data_tables/dnacoaxial.dat
eFISHent/data_tables/dnacoaxial.dh
eFISHent/data_tables/dnacoaxstack.dat
eFISHent/data_tables/dnacoaxstack.dh
eFISHent/data_tables/dnadangle.dat
eFISHent/data_tables/dnadangle.dh
eFISHent/data_tables/dnadynalignmiscloop.dat
eFISHent/data_tables/dnadynalignmiscloop.dh
eFISHent/data_tables/dnahexaloop.dat
eFISHent/data_tables/dnahexaloop.dh
eFISHent/data_tables/dnaint11.dat
eFISHent/data_tables/dnaint11.dh
eFISHent/data_tables/dnaint21.dat
eFISHent/data_tables/dnaint21.dh
eFISHent/data_tables/dnaint22.dat
eFISHent/data_tables/dnaint22.dh
eFISHent/data_tables/dnaloop.dat
eFISHent/data_tables/dnaloop.dh
eFISHent/data_tables/dnamiscloop.dat
eFISHent/data_tables/dnamiscloop.dh
eFISHent/data_tables/dnastack.dat
eFISHent/data_tables/dnastack.dh
eFISHent/data_tables/dnatloop.dat
eFISHent/data_tables/dnatloop.dh
eFISHent/data_tables/dnatriloop.dat
eFISHent/data_tables/dnatriloop.dh
eFISHent/data_tables/dnatstack.dat
eFISHent/data_tables/dnatstack.dh
eFISHent/data_tables/dnatstackcoax.dat
eFISHent/data_tables/dnatstackcoax.dh
eFISHent/data_tables/dnatstackh.dat
eFISHent/data_tables/dnatstackh.dh
eFISHent/data_tables/dnatstacki.dat
eFISHent/data_tables/dnatstacki.dh
eFISHent/data_tables/dnatstacki1n.dat
eFISHent/data_tables/dnatstacki1n.dh
eFISHent/data_tables/dnatstacki23.dat
eFISHent/data_tables/dnatstacki23.dh
eFISHent/data_tables/dnatstackm.dat
eFISHent/data_tables/dnatstackm.dh
eFISHent/data_tables/dynalignmiscloop.dat
eFISHent/data_tables/fam_hmm_pars.dat
eFISHent/data_tables/helix.dat
eFISHent/data_tables/helixdr.dat
eFISHent/data_tables/hexaloop.dat
eFISHent/data_tables/hexaloop.dh
eFISHent/data_tables/int11.dat
eFISHent/data_tables/int11.dh
eFISHent/data_tables/int21.dat
eFISHent/data_tables/int21.dh
eFISHent/data_tables/int22-exp.dh
eFISHent/data_tables/int22.dat
eFISHent/data_tables/int22.dh
eFISHent/data_tables/loop.dat
eFISHent/data_tables/loop.dh
eFISHent/data_tables/m6A.coaxial.dg
eFISHent/data_tables/m6A.coaxstack.dg
eFISHent/data_tables/m6A.dangle.dg
eFISHent/data_tables/m6A.hexaloop.dg
eFISHent/data_tables/m6A.int11.dg
eFISHent/data_tables/m6A.int21.dg
eFISHent/data_tables/m6A.int22.dg
eFISHent/data_tables/m6A.loop.dg
eFISHent/data_tables/m6A.miscloop.dg
eFISHent/data_tables/m6A.specification.dat
eFISHent/data_tables/m6A.stack.dg
eFISHent/data_tables/m6A.tloop.dg
eFISHent/data_tables/m6A.triloop.dg
eFISHent/data_tables/m6A.tstack.dg
eFISHent/data_tables/m6A.tstackcoax.dg
eFISHent/data_tables/m6A.tstackh.dg
eFISHent/data_tables/m6A.tstacki.dg
eFISHent/data_tables/m6A.tstacki1n.dg
eFISHent/data_tables/m6A.tstacki23.dg
eFISHent/data_tables/m6A.tstackm.dg
eFISHent/data_tables/miscloop.dat
eFISHent/data_tables/miscloop.dh
eFISHent/data_tables/pseudconst.dat
eFISHent/data_tables/rna.coaxial.dg
eFISHent/data_tables/rna.coaxial.dh
eFISHent/data_tables/rna.coaxstack.dg
eFISHent/data_tables/rna.coaxstack.dh
eFISHent/data_tables/rna.cov.dg
eFISHent/data_tables/rna.cov.dh
eFISHent/data_tables/rna.dangle.dg
eFISHent/data_tables/rna.dangle.dh
eFISHent/data_tables/rna.dynalignmiscloop.dg
eFISHent/data_tables/rna.hexaloop.dg
eFISHent/data_tables/rna.hexaloop.dh
eFISHent/data_tables/rna.int11.dg
eFISHent/data_tables/rna.int11.dh
eFISHent/data_tables/rna.int21.dg
eFISHent/data_tables/rna.int21.dh
eFISHent/data_tables/rna.int22.dg
eFISHent/data_tables/rna.int22.dh
eFISHent/data_tables/rna.loop.dg
eFISHent/data_tables/rna.loop.dh
eFISHent/data_tables/rna.miscloop.dg
eFISHent/data_tables/rna.miscloop.dh
eFISHent/data_tables/rna.param_map.dg
eFISHent/data_tables/rna.specification.dat
eFISHent/data_tables/rna.stack.dg
eFISHent/data_tables/rna.stack.dh
eFISHent/data_tables/rna.tloop.dg
eFISHent/data_tables/rna.tloop.dh
eFISHent/data_tables/rna.triloop.dg
eFISHent/data_tables/rna.triloop.dh
eFISHent/data_tables/rna.tstack.dg
eFISHent/data_tables/rna.tstack.dh
eFISHent/data_tables/rna.tstackcoax.dg
eFISHent/data_tables/rna.tstackcoax.dh
eFISHent/data_tables/rna.tstackh.dg
eFISHent/data_tables/rna.tstackh.dh
eFISHent/data_tables/rna.tstacki.dg
eFISHent/data_tables/rna.tstacki.dh
eFISHent/data_tables/rna.tstacki1n.dg
eFISHent/data_tables/rna.tstacki1n.dh
eFISHent/data_tables/rna.tstacki23.dg
eFISHent/data_tables/rna.tstacki23.dh
eFISHent/data_tables/rna.tstackm.dg
eFISHent/data_tables/rna.tstackm.dh
eFISHent/data_tables/stack.dat
eFISHent/data_tables/stack.dh
eFISHent/data_tables/stackdr.dat
eFISHent/data_tables/stackdr.dh
eFISHent/data_tables/tloop.dat
eFISHent/data_tables/tloop.dh
eFISHent/data_tables/triloop.dat
eFISHent/data_tables/triloop.dh
eFISHent/data_tables/tstack.dat
eFISHent/data_tables/tstack.dh
eFISHent/data_tables/tstackcoax.dat
eFISHent/data_tables/tstackcoax.dh
eFISHent/data_tables/tstackh.dat
eFISHent/data_tables/tstackh.dh
eFISHent/data_tables/tstacki.dat
eFISHent/data_tables/tstacki.dh
eFISHent/data_tables/tstacki1n.dat
eFISHent/data_tables/tstacki1n.dh
eFISHent/data_tables/tstacki23.dat
eFISHent/data_tables/tstacki23.dh
eFISHent/data_tables/tstackm.dat
eFISHent/data_tables/tstackm.dh