LICENSE
README.md
pyproject.toml
setup.py
demo/app.py
docs/scripts/plugin.py
edsnlp/__init__.py
edsnlp/components.py
edsnlp/conjugator.py
edsnlp/extensions.py
edsnlp/language.py
edsnlp/patch_spacy_dot_components.py
edsnlp.egg-info/PKG-INFO
edsnlp.egg-info/SOURCES.txt
edsnlp.egg-info/dependency_links.txt
edsnlp.egg-info/entry_points.txt
edsnlp.egg-info/requires.txt
edsnlp.egg-info/top_level.txt
edsnlp/connectors/__init__.py
edsnlp/connectors/brat.py
edsnlp/connectors/labeltool.py
edsnlp/connectors/omop.py
edsnlp/matchers/__init__.py
edsnlp/matchers/phrase.cpp
edsnlp/matchers/regex.py
edsnlp/matchers/simstring.py
edsnlp/matchers/utils/__init__.py
edsnlp/matchers/utils/offset.py
edsnlp/matchers/utils/text.py
edsnlp/pipelines/__init__.py
edsnlp/pipelines/base.py
edsnlp/pipelines/factories.py
edsnlp/pipelines/terminations.py
edsnlp/pipelines/core/__init__.py
edsnlp/pipelines/core/context/__init__.py
edsnlp/pipelines/core/context/context.py
edsnlp/pipelines/core/context/factory.py
edsnlp/pipelines/core/contextual_matcher/__init__.py
edsnlp/pipelines/core/contextual_matcher/contextual_matcher.py
edsnlp/pipelines/core/contextual_matcher/factory.py
edsnlp/pipelines/core/contextual_matcher/models.py
edsnlp/pipelines/core/endlines/__init__.py
edsnlp/pipelines/core/endlines/endlines.py
edsnlp/pipelines/core/endlines/endlinesmodel.py
edsnlp/pipelines/core/endlines/factory.py
edsnlp/pipelines/core/endlines/functional.py
edsnlp/pipelines/core/matcher/__init__.py
edsnlp/pipelines/core/matcher/factory.py
edsnlp/pipelines/core/matcher/matcher.py
edsnlp/pipelines/core/normalizer/__init__.py
edsnlp/pipelines/core/normalizer/factory.py
edsnlp/pipelines/core/normalizer/normalizer.py
edsnlp/pipelines/core/normalizer/accents/__init__.py
edsnlp/pipelines/core/normalizer/accents/accents.py
edsnlp/pipelines/core/normalizer/accents/factory.py
edsnlp/pipelines/core/normalizer/accents/patterns.py
edsnlp/pipelines/core/normalizer/lowercase/__init__.py
edsnlp/pipelines/core/normalizer/lowercase/factory.py
edsnlp/pipelines/core/normalizer/pollution/__init__.py
edsnlp/pipelines/core/normalizer/pollution/factory.py
edsnlp/pipelines/core/normalizer/pollution/patterns.py
edsnlp/pipelines/core/normalizer/pollution/pollution.py
edsnlp/pipelines/core/normalizer/quotes/__init__.py
edsnlp/pipelines/core/normalizer/quotes/factory.py
edsnlp/pipelines/core/normalizer/quotes/patterns.py
edsnlp/pipelines/core/normalizer/quotes/quotes.py
edsnlp/pipelines/core/normalizer/spaces/__init__.py
edsnlp/pipelines/core/normalizer/spaces/factory.py
edsnlp/pipelines/core/normalizer/spaces/spaces.py
edsnlp/pipelines/core/sentences/__init__.py
edsnlp/pipelines/core/sentences/factory.py
edsnlp/pipelines/core/sentences/sentences.cpp
edsnlp/pipelines/core/sentences/terms.py
edsnlp/pipelines/core/terminology/__init__.py
edsnlp/pipelines/core/terminology/factory.py
edsnlp/pipelines/core/terminology/terminology.py
edsnlp/pipelines/misc/__init__.py
edsnlp/pipelines/misc/consultation_dates/__init__.py
edsnlp/pipelines/misc/consultation_dates/consultation_dates.py
edsnlp/pipelines/misc/consultation_dates/factory.py
edsnlp/pipelines/misc/consultation_dates/patterns.py
edsnlp/pipelines/misc/dates/__init__.py
edsnlp/pipelines/misc/dates/dates.py
edsnlp/pipelines/misc/dates/factory.py
edsnlp/pipelines/misc/dates/models.py
edsnlp/pipelines/misc/dates/patterns/__init__.py
edsnlp/pipelines/misc/dates/patterns/absolute.py
edsnlp/pipelines/misc/dates/patterns/current.py
edsnlp/pipelines/misc/dates/patterns/duration.py
edsnlp/pipelines/misc/dates/patterns/false_positive.py
edsnlp/pipelines/misc/dates/patterns/relative.py
edsnlp/pipelines/misc/dates/patterns/atomic/__init__.py
edsnlp/pipelines/misc/dates/patterns/atomic/days.py
edsnlp/pipelines/misc/dates/patterns/atomic/delimiters.py
edsnlp/pipelines/misc/dates/patterns/atomic/directions.py
edsnlp/pipelines/misc/dates/patterns/atomic/modes.py
edsnlp/pipelines/misc/dates/patterns/atomic/months.py
edsnlp/pipelines/misc/dates/patterns/atomic/numbers.py
edsnlp/pipelines/misc/dates/patterns/atomic/time.py
edsnlp/pipelines/misc/dates/patterns/atomic/units.py
edsnlp/pipelines/misc/dates/patterns/atomic/years.py
edsnlp/pipelines/misc/measurements/__init__.py
edsnlp/pipelines/misc/measurements/factory.py
edsnlp/pipelines/misc/measurements/measurements.py
edsnlp/pipelines/misc/measurements/patterns.py
edsnlp/pipelines/misc/reason/__init__.py
edsnlp/pipelines/misc/reason/factory.py
edsnlp/pipelines/misc/reason/patterns.py
edsnlp/pipelines/misc/reason/reason.py
edsnlp/pipelines/misc/sections/__init__.py
edsnlp/pipelines/misc/sections/factory.py
edsnlp/pipelines/misc/sections/patterns.py
edsnlp/pipelines/misc/sections/sections.py
edsnlp/pipelines/misc/tables/__init__.py
edsnlp/pipelines/misc/tables/factory.py
edsnlp/pipelines/misc/tables/patterns.py
edsnlp/pipelines/misc/tables/tables.py
edsnlp/pipelines/ner/__init__.py
edsnlp/pipelines/ner/adicap/__init__.py
edsnlp/pipelines/ner/adicap/adicap.py
edsnlp/pipelines/ner/adicap/factory.py
edsnlp/pipelines/ner/adicap/models.py
edsnlp/pipelines/ner/adicap/patterns.py
edsnlp/pipelines/ner/behaviors/__init__.py
edsnlp/pipelines/ner/behaviors/alcohol/__init__.py
edsnlp/pipelines/ner/behaviors/alcohol/alcohol.py
edsnlp/pipelines/ner/behaviors/alcohol/factory.py
edsnlp/pipelines/ner/behaviors/alcohol/patterns.py
edsnlp/pipelines/ner/behaviors/tobacco/__init__.py
edsnlp/pipelines/ner/behaviors/tobacco/factory.py
edsnlp/pipelines/ner/behaviors/tobacco/patterns.py
edsnlp/pipelines/ner/behaviors/tobacco/tobacco.py
edsnlp/pipelines/ner/cim10/__init__.py
edsnlp/pipelines/ner/cim10/factory.py
edsnlp/pipelines/ner/cim10/patterns.py
edsnlp/pipelines/ner/covid/__init__.py
edsnlp/pipelines/ner/covid/factory.py
edsnlp/pipelines/ner/covid/patterns.py
edsnlp/pipelines/ner/disorders/__init__.py
edsnlp/pipelines/ner/disorders/base.py
edsnlp/pipelines/ner/disorders/helpers.py
edsnlp/pipelines/ner/disorders/terms.py
edsnlp/pipelines/ner/disorders/AIDS/AIDS.py
edsnlp/pipelines/ner/disorders/AIDS/__init__.py
edsnlp/pipelines/ner/disorders/AIDS/factory.py
edsnlp/pipelines/ner/disorders/AIDS/patterns.py
edsnlp/pipelines/ner/disorders/CKD/CKD.py
edsnlp/pipelines/ner/disorders/CKD/__init__.py
edsnlp/pipelines/ner/disorders/CKD/factory.py
edsnlp/pipelines/ner/disorders/CKD/patterns.py
edsnlp/pipelines/ner/disorders/COPD/COPD.py
edsnlp/pipelines/ner/disorders/COPD/__init__.py
edsnlp/pipelines/ner/disorders/COPD/factory.py
edsnlp/pipelines/ner/disorders/COPD/patterns.py
edsnlp/pipelines/ner/disorders/cerebrovascular_accident/__init__.py
edsnlp/pipelines/ner/disorders/cerebrovascular_accident/cerebrovascular_accident.py
edsnlp/pipelines/ner/disorders/cerebrovascular_accident/factory.py
edsnlp/pipelines/ner/disorders/cerebrovascular_accident/patterns.py
edsnlp/pipelines/ner/disorders/congestive_heart_failure/__init__.py
edsnlp/pipelines/ner/disorders/congestive_heart_failure/congestive_heart_failure.py
edsnlp/pipelines/ner/disorders/congestive_heart_failure/factory.py
edsnlp/pipelines/ner/disorders/congestive_heart_failure/patterns.py
edsnlp/pipelines/ner/disorders/connective_tissue_disease/__init__.py
edsnlp/pipelines/ner/disorders/connective_tissue_disease/connective_tissue_disease.py
edsnlp/pipelines/ner/disorders/connective_tissue_disease/factory.py
edsnlp/pipelines/ner/disorders/connective_tissue_disease/patterns.py
edsnlp/pipelines/ner/disorders/dementia/__init__.py
edsnlp/pipelines/ner/disorders/dementia/dementia.py
edsnlp/pipelines/ner/disorders/dementia/factory.py
edsnlp/pipelines/ner/disorders/dementia/patterns.py
edsnlp/pipelines/ner/disorders/diabetes/__init__.py
edsnlp/pipelines/ner/disorders/diabetes/diabetes.py
edsnlp/pipelines/ner/disorders/diabetes/factory.py
edsnlp/pipelines/ner/disorders/diabetes/patterns.py
edsnlp/pipelines/ner/disorders/hemiplegia/__init__.py
edsnlp/pipelines/ner/disorders/hemiplegia/factory.py
edsnlp/pipelines/ner/disorders/hemiplegia/hemiplegia.py
edsnlp/pipelines/ner/disorders/hemiplegia/patterns.py
edsnlp/pipelines/ner/disorders/leukemia/__init__.py
edsnlp/pipelines/ner/disorders/leukemia/factory.py
edsnlp/pipelines/ner/disorders/leukemia/leukemia.py
edsnlp/pipelines/ner/disorders/leukemia/patterns.py
edsnlp/pipelines/ner/disorders/liver_disease/__init__.py
edsnlp/pipelines/ner/disorders/liver_disease/factory.py
edsnlp/pipelines/ner/disorders/liver_disease/liver_disease.py
edsnlp/pipelines/ner/disorders/liver_disease/patterns.py
edsnlp/pipelines/ner/disorders/lymphoma/__init__.py
edsnlp/pipelines/ner/disorders/lymphoma/factory.py
edsnlp/pipelines/ner/disorders/lymphoma/lymphoma.py
edsnlp/pipelines/ner/disorders/lymphoma/patterns.py
edsnlp/pipelines/ner/disorders/myocardial_infarction/__init__.py
edsnlp/pipelines/ner/disorders/myocardial_infarction/factory.py
edsnlp/pipelines/ner/disorders/myocardial_infarction/myocardial_infarction.py
edsnlp/pipelines/ner/disorders/myocardial_infarction/patterns.py
edsnlp/pipelines/ner/disorders/peptic_ulcer_disease/__init__.py
edsnlp/pipelines/ner/disorders/peptic_ulcer_disease/factory.py
edsnlp/pipelines/ner/disorders/peptic_ulcer_disease/patterns.py
edsnlp/pipelines/ner/disorders/peptic_ulcer_disease/peptic_ulcer_disease.py
edsnlp/pipelines/ner/disorders/peripheral_vascular_disease/__init__.py
edsnlp/pipelines/ner/disorders/peripheral_vascular_disease/factory.py
edsnlp/pipelines/ner/disorders/peripheral_vascular_disease/patterns.py
edsnlp/pipelines/ner/disorders/peripheral_vascular_disease/peripheral_vascular_disease.py
edsnlp/pipelines/ner/disorders/solid_tumor/__init__.py
edsnlp/pipelines/ner/disorders/solid_tumor/factory.py
edsnlp/pipelines/ner/disorders/solid_tumor/patterns.py
edsnlp/pipelines/ner/disorders/solid_tumor/solid_tumor.py
edsnlp/pipelines/ner/drugs/__init__.py
edsnlp/pipelines/ner/drugs/factory.py
edsnlp/pipelines/ner/drugs/patterns.py
edsnlp/pipelines/ner/scores/__init__.py
edsnlp/pipelines/ner/scores/base_score.py
edsnlp/pipelines/ner/scores/factory.py
edsnlp/pipelines/ner/scores/charlson/__init__.py
edsnlp/pipelines/ner/scores/charlson/factory.py
edsnlp/pipelines/ner/scores/charlson/patterns.py
edsnlp/pipelines/ner/scores/elstonellis/__init__.py
edsnlp/pipelines/ner/scores/elstonellis/factory.py
edsnlp/pipelines/ner/scores/elstonellis/patterns.py
edsnlp/pipelines/ner/scores/emergency/__init__.py
edsnlp/pipelines/ner/scores/emergency/ccmu/__init__.py
edsnlp/pipelines/ner/scores/emergency/ccmu/factory.py
edsnlp/pipelines/ner/scores/emergency/ccmu/patterns.py
edsnlp/pipelines/ner/scores/emergency/gemsa/__init__.py
edsnlp/pipelines/ner/scores/emergency/gemsa/factory.py
edsnlp/pipelines/ner/scores/emergency/gemsa/patterns.py
edsnlp/pipelines/ner/scores/emergency/priority/__init__.py
edsnlp/pipelines/ner/scores/emergency/priority/factory.py
edsnlp/pipelines/ner/scores/emergency/priority/patterns.py
edsnlp/pipelines/ner/scores/sofa/__init__.py
edsnlp/pipelines/ner/scores/sofa/factory.py
edsnlp/pipelines/ner/scores/sofa/patterns.py
edsnlp/pipelines/ner/scores/sofa/sofa.py
edsnlp/pipelines/ner/scores/tnm/__init__.py
edsnlp/pipelines/ner/scores/tnm/factory.py
edsnlp/pipelines/ner/scores/tnm/models.py
edsnlp/pipelines/ner/scores/tnm/patterns.py
edsnlp/pipelines/ner/scores/tnm/tnm.py
edsnlp/pipelines/ner/umls/__init__.py
edsnlp/pipelines/ner/umls/factory.py
edsnlp/pipelines/ner/umls/patterns.py
edsnlp/pipelines/qualifiers/__init__.py
edsnlp/pipelines/qualifiers/base.py
edsnlp/pipelines/qualifiers/factories.py
edsnlp/pipelines/qualifiers/family/__init__.py
edsnlp/pipelines/qualifiers/family/factory.py
edsnlp/pipelines/qualifiers/family/family.py
edsnlp/pipelines/qualifiers/family/patterns.py
edsnlp/pipelines/qualifiers/history/__init__.py
edsnlp/pipelines/qualifiers/history/factory.py
edsnlp/pipelines/qualifiers/history/history.py
edsnlp/pipelines/qualifiers/history/patterns.py
edsnlp/pipelines/qualifiers/hypothesis/__init__.py
edsnlp/pipelines/qualifiers/hypothesis/factory.py
edsnlp/pipelines/qualifiers/hypothesis/hypothesis.py
edsnlp/pipelines/qualifiers/hypothesis/patterns.py
edsnlp/pipelines/qualifiers/negation/__init__.py
edsnlp/pipelines/qualifiers/negation/factory.py
edsnlp/pipelines/qualifiers/negation/negation.py
edsnlp/pipelines/qualifiers/negation/patterns.py
edsnlp/pipelines/qualifiers/reported_speech/__init__.py
edsnlp/pipelines/qualifiers/reported_speech/factory.py
edsnlp/pipelines/qualifiers/reported_speech/patterns.py
edsnlp/pipelines/qualifiers/reported_speech/reported_speech.py
edsnlp/pipelines/trainable/__init__.py
edsnlp/pipelines/trainable/pytorch_wrapper.py
edsnlp/pipelines/trainable/layers/__init__.py
edsnlp/pipelines/trainable/layers/crf.py
edsnlp/pipelines/trainable/nested_ner/__init__.py
edsnlp/pipelines/trainable/nested_ner/factory.py
edsnlp/pipelines/trainable/nested_ner/nested_ner.py
edsnlp/pipelines/trainable/nested_ner/stack_crf_ner.py
edsnlp/pipelines/trainable/span_qualifier/__init__.py
edsnlp/pipelines/trainable/span_qualifier/factory.py
edsnlp/pipelines/trainable/span_qualifier/span_multi_classifier.py
edsnlp/pipelines/trainable/span_qualifier/span_qualifier.py
edsnlp/pipelines/trainable/span_qualifier/utils.py
edsnlp/processing/__init__.py
edsnlp/processing/distributed.py
edsnlp/processing/helpers.py
edsnlp/processing/parallel.py
edsnlp/processing/simple.py
edsnlp/processing/utils.py
edsnlp/processing/wrapper.py
edsnlp/resources/AVC.csv.gz
edsnlp/resources/adicap.json.gz
edsnlp/resources/cim10.csv.gz
edsnlp/resources/drugs.json
edsnlp/resources/verbs.csv.gz
edsnlp/utils/__init__.py
edsnlp/utils/blocs.py
edsnlp/utils/collections.py
edsnlp/utils/colors.py
edsnlp/utils/deprecation.py
edsnlp/utils/examples.py
edsnlp/utils/extensions.py
edsnlp/utils/filter.py
edsnlp/utils/inclusion.py
edsnlp/utils/lists.py
edsnlp/utils/merge_configs.py
edsnlp/utils/numbers.py
edsnlp/utils/regex.py
edsnlp/utils/resources.py
edsnlp/utils/span_getters.py
edsnlp/utils/training.py
edsnlp/viz/__init__.py
edsnlp/viz/quick_examples.py
notebooks/context.py
notebooks/connectors/context.py
notebooks/dates/context.py
notebooks/normalizer/context.py
notebooks/sections/context.py
notebooks/sentences/context.py
notebooks/tokenizer/context.py
notebooks/utilities/context.py
scripts/adicap.py
scripts/cim10.py
scripts/conjugate_verbs.py
scripts/context.py
scripts/serve.py
tests/conftest.py
tests/test_conjugator.py
tests/test_docs.py
tests/test_language.py
tests/connectors/test_brat.py
tests/connectors/test_labeltool.py
tests/connectors/test_omop.py
tests/matchers/test_phrase.py
tests/matchers/test_regex.py
tests/matchers/test_simstring.py
tests/pipelines/test_pipelines.py
tests/pipelines/core/test_contextual_matcher.py
tests/pipelines/core/test_endlines.py
tests/pipelines/core/test_matcher.py
tests/pipelines/core/test_normalisation.py
tests/pipelines/core/test_sentences.py
tests/pipelines/core/test_terminology.py
tests/pipelines/misc/test_consultation_date.py
tests/pipelines/misc/test_dates.py
tests/pipelines/misc/test_measurements.py
tests/pipelines/misc/test_reason.py
tests/pipelines/misc/test_sections.py
tests/pipelines/misc/test_tables.py
tests/pipelines/ner/test_adicap.py
tests/pipelines/ner/test_adicap_decoder.py
tests/pipelines/ner/test_cim10.py
tests/pipelines/ner/test_covid.py
tests/pipelines/ner/test_drugs.py
tests/pipelines/ner/test_score.py
tests/pipelines/ner/test_tnm.py
tests/pipelines/ner/test_umls.py
tests/pipelines/ner/disorders/AIDS.py
tests/pipelines/ner/disorders/CKD.py
tests/pipelines/ner/disorders/COPD.py
tests/pipelines/ner/disorders/alcohol.py
tests/pipelines/ner/disorders/cerebrovascular_accident.py
tests/pipelines/ner/disorders/congestive_heart_failure.py
tests/pipelines/ner/disorders/connective_tissue_disease.py
tests/pipelines/ner/disorders/dementia.py
tests/pipelines/ner/disorders/diabetes.py
tests/pipelines/ner/disorders/hemiplegia.py
tests/pipelines/ner/disorders/leukemia.py
tests/pipelines/ner/disorders/liver_disease.py
tests/pipelines/ner/disorders/lymphoma.py
tests/pipelines/ner/disorders/myocardial_infarction.py
tests/pipelines/ner/disorders/peptic_ulcer_disease.py
tests/pipelines/ner/disorders/peripheral_vascular_disease.py
tests/pipelines/ner/disorders/solid_tumor.py
tests/pipelines/ner/disorders/test_all.py
tests/pipelines/ner/disorders/tobacco.py
tests/pipelines/qualifiers/conftest.py
tests/pipelines/qualifiers/test_family.py
tests/pipelines/qualifiers/test_history.py
tests/pipelines/qualifiers/test_hypothesis.py
tests/pipelines/qualifiers/test_negation.py
tests/pipelines/qualifiers/test_reported_speech.py
tests/pipelines/trainable/test_nested_ner.py
tests/pipelines/trainable/test_span_classifier.py
tests/processing/test_processing.py
tests/utils/test_examples.py
tests/utils/test_filter.py
tests/utils/test_quick_examples.py