LICENSE
README.md
pyproject.toml
setup.py
demo/app.py
docs/scripts/bibtex.py
docs/scripts/cards.py
docs/scripts/griffe_ext.py
docs/scripts/plugin.py
docs/scripts/autorefs/plugin.py
edsnlp/__init__.py
edsnlp/conjugator.py
edsnlp/extensions.py
edsnlp/language.py
edsnlp/optimization.py
edsnlp/patch_spacy.py
edsnlp/train.py
edsnlp.egg-info/PKG-INFO
edsnlp.egg-info/SOURCES.txt
edsnlp.egg-info/dependency_links.txt
edsnlp.egg-info/entry_points.txt
edsnlp.egg-info/requires.txt
edsnlp.egg-info/top_level.txt
edsnlp/connectors/__init__.py
edsnlp/connectors/brat.py
edsnlp/connectors/labeltool.py
edsnlp/connectors/omop.py
edsnlp/core/__init__.py
edsnlp/core/lazy_collection.py
edsnlp/core/pipeline.py
edsnlp/core/registries.py
edsnlp/core/torch_component.py
edsnlp/data/__init__.py
edsnlp/data/base.py
edsnlp/data/brat.py
edsnlp/data/converters.py
edsnlp/data/json.py
edsnlp/data/pandas.py
edsnlp/data/parquet.py
edsnlp/data/polars.py
edsnlp/data/spark.py
edsnlp/data/standoff.py
edsnlp/matchers/__init__.py
edsnlp/matchers/phrase.cpp
edsnlp/matchers/phrase.pxd
edsnlp/matchers/phrase.pyx
edsnlp/matchers/regex.py
edsnlp/matchers/simstring.py
edsnlp/matchers/utils/__init__.py
edsnlp/matchers/utils/offset.py
edsnlp/matchers/utils/text.py
edsnlp/pipes/__init__.py
edsnlp/pipes/base.py
edsnlp/pipes/terminations.py
edsnlp/pipes/core/__init__.py
edsnlp/pipes/core/contextual_matcher/__init__.py
edsnlp/pipes/core/contextual_matcher/contextual_matcher.py
edsnlp/pipes/core/contextual_matcher/factory.py
edsnlp/pipes/core/contextual_matcher/models.py
edsnlp/pipes/core/endlines/__init__.py
edsnlp/pipes/core/endlines/endlines.py
edsnlp/pipes/core/endlines/factory.py
edsnlp/pipes/core/endlines/functional.py
edsnlp/pipes/core/endlines/model.py
edsnlp/pipes/core/matcher/__init__.py
edsnlp/pipes/core/matcher/factory.py
edsnlp/pipes/core/matcher/matcher.py
edsnlp/pipes/core/normalizer/__init__.py
edsnlp/pipes/core/normalizer/factory.py
edsnlp/pipes/core/normalizer/normalizer.py
edsnlp/pipes/core/normalizer/accents/__init__.py
edsnlp/pipes/core/normalizer/accents/accents.py
edsnlp/pipes/core/normalizer/accents/factory.py
edsnlp/pipes/core/normalizer/accents/patterns.py
edsnlp/pipes/core/normalizer/pollution/__init__.py
edsnlp/pipes/core/normalizer/pollution/factory.py
edsnlp/pipes/core/normalizer/pollution/patterns.py
edsnlp/pipes/core/normalizer/pollution/pollution.py
edsnlp/pipes/core/normalizer/quotes/__init__.py
edsnlp/pipes/core/normalizer/quotes/factory.py
edsnlp/pipes/core/normalizer/quotes/patterns.py
edsnlp/pipes/core/normalizer/quotes/quotes.py
edsnlp/pipes/core/normalizer/remove_lowercase/__init__.py
edsnlp/pipes/core/normalizer/remove_lowercase/factory.py
edsnlp/pipes/core/normalizer/spaces/__init__.py
edsnlp/pipes/core/normalizer/spaces/factory.py
edsnlp/pipes/core/normalizer/spaces/spaces.py
edsnlp/pipes/core/sentences/__init__.py
edsnlp/pipes/core/sentences/factory.py
edsnlp/pipes/core/sentences/fast_sentences.cpp
edsnlp/pipes/core/sentences/fast_sentences.pxd
edsnlp/pipes/core/sentences/fast_sentences.pyx
edsnlp/pipes/core/sentences/sentences.py
edsnlp/pipes/core/sentences/terms.py
edsnlp/pipes/core/terminology/__init__.py
edsnlp/pipes/core/terminology/factory.py
edsnlp/pipes/core/terminology/terminology.py
edsnlp/pipes/misc/__init__.py
edsnlp/pipes/misc/consultation_dates/__init__.py
edsnlp/pipes/misc/consultation_dates/consultation_dates.py
edsnlp/pipes/misc/consultation_dates/factory.py
edsnlp/pipes/misc/consultation_dates/patterns.py
edsnlp/pipes/misc/dates/__init__.py
edsnlp/pipes/misc/dates/dates.py
edsnlp/pipes/misc/dates/factory.py
edsnlp/pipes/misc/dates/models.py
edsnlp/pipes/misc/dates/patterns/__init__.py
edsnlp/pipes/misc/dates/patterns/absolute.py
edsnlp/pipes/misc/dates/patterns/current.py
edsnlp/pipes/misc/dates/patterns/duration.py
edsnlp/pipes/misc/dates/patterns/false_positive.py
edsnlp/pipes/misc/dates/patterns/relative.py
edsnlp/pipes/misc/dates/patterns/atomic/__init__.py
edsnlp/pipes/misc/dates/patterns/atomic/days.py
edsnlp/pipes/misc/dates/patterns/atomic/delimiters.py
edsnlp/pipes/misc/dates/patterns/atomic/directions.py
edsnlp/pipes/misc/dates/patterns/atomic/modes.py
edsnlp/pipes/misc/dates/patterns/atomic/months.py
edsnlp/pipes/misc/dates/patterns/atomic/numbers.py
edsnlp/pipes/misc/dates/patterns/atomic/time.py
edsnlp/pipes/misc/dates/patterns/atomic/units.py
edsnlp/pipes/misc/dates/patterns/atomic/years.py
edsnlp/pipes/misc/measurements/__init__.py
edsnlp/pipes/misc/measurements/factory.py
edsnlp/pipes/misc/measurements/measurements.py
edsnlp/pipes/misc/measurements/patterns.py
edsnlp/pipes/misc/reason/__init__.py
edsnlp/pipes/misc/reason/factory.py
edsnlp/pipes/misc/reason/patterns.py
edsnlp/pipes/misc/reason/reason.py
edsnlp/pipes/misc/sections/__init__.py
edsnlp/pipes/misc/sections/factory.py
edsnlp/pipes/misc/sections/patterns.py
edsnlp/pipes/misc/sections/sections.py
edsnlp/pipes/misc/tables/__init__.py
edsnlp/pipes/misc/tables/factory.py
edsnlp/pipes/misc/tables/patterns.py
edsnlp/pipes/misc/tables/tables.py
edsnlp/pipes/ner/__init__.py
edsnlp/pipes/ner/adicap/__init__.py
edsnlp/pipes/ner/adicap/adicap.py
edsnlp/pipes/ner/adicap/factory.py
edsnlp/pipes/ner/adicap/models.py
edsnlp/pipes/ner/adicap/patterns.py
edsnlp/pipes/ner/behaviors/__init__.py
edsnlp/pipes/ner/behaviors/alcohol/__init__.py
edsnlp/pipes/ner/behaviors/alcohol/alcohol.py
edsnlp/pipes/ner/behaviors/alcohol/factory.py
edsnlp/pipes/ner/behaviors/alcohol/patterns.py
edsnlp/pipes/ner/behaviors/tobacco/__init__.py
edsnlp/pipes/ner/behaviors/tobacco/factory.py
edsnlp/pipes/ner/behaviors/tobacco/patterns.py
edsnlp/pipes/ner/behaviors/tobacco/tobacco.py
edsnlp/pipes/ner/cim10/__init__.py
edsnlp/pipes/ner/cim10/factory.py
edsnlp/pipes/ner/cim10/patterns.py
edsnlp/pipes/ner/covid/__init__.py
edsnlp/pipes/ner/covid/factory.py
edsnlp/pipes/ner/covid/patterns.py
edsnlp/pipes/ner/disorders/__init__.py
edsnlp/pipes/ner/disorders/base.py
edsnlp/pipes/ner/disorders/terms.py
edsnlp/pipes/ner/disorders/aids/__init__.py
edsnlp/pipes/ner/disorders/aids/aids.py
edsnlp/pipes/ner/disorders/aids/factory.py
edsnlp/pipes/ner/disorders/aids/patterns.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/__init__.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/cerebrovascular_accident.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/factory.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/patterns.py
edsnlp/pipes/ner/disorders/ckd/__init__.py
edsnlp/pipes/ner/disorders/ckd/ckd.py
edsnlp/pipes/ner/disorders/ckd/factory.py
edsnlp/pipes/ner/disorders/ckd/patterns.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/__init__.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/congestive_heart_failure.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/factory.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/patterns.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/__init__.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/connective_tissue_disease.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/factory.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/patterns.py
edsnlp/pipes/ner/disorders/copd/__init__.py
edsnlp/pipes/ner/disorders/copd/copd.py
edsnlp/pipes/ner/disorders/copd/factory.py
edsnlp/pipes/ner/disorders/copd/patterns.py
edsnlp/pipes/ner/disorders/dementia/__init__.py
edsnlp/pipes/ner/disorders/dementia/dementia.py
edsnlp/pipes/ner/disorders/dementia/factory.py
edsnlp/pipes/ner/disorders/dementia/patterns.py
edsnlp/pipes/ner/disorders/diabetes/__init__.py
edsnlp/pipes/ner/disorders/diabetes/diabetes.py
edsnlp/pipes/ner/disorders/diabetes/factory.py
edsnlp/pipes/ner/disorders/diabetes/patterns.py
edsnlp/pipes/ner/disorders/hemiplegia/__init__.py
edsnlp/pipes/ner/disorders/hemiplegia/factory.py
edsnlp/pipes/ner/disorders/hemiplegia/hemiplegia.py
edsnlp/pipes/ner/disorders/hemiplegia/patterns.py
edsnlp/pipes/ner/disorders/leukemia/__init__.py
edsnlp/pipes/ner/disorders/leukemia/factory.py
edsnlp/pipes/ner/disorders/leukemia/leukemia.py
edsnlp/pipes/ner/disorders/leukemia/patterns.py
edsnlp/pipes/ner/disorders/liver_disease/__init__.py
edsnlp/pipes/ner/disorders/liver_disease/factory.py
edsnlp/pipes/ner/disorders/liver_disease/liver_disease.py
edsnlp/pipes/ner/disorders/liver_disease/patterns.py
edsnlp/pipes/ner/disorders/lymphoma/__init__.py
edsnlp/pipes/ner/disorders/lymphoma/factory.py
edsnlp/pipes/ner/disorders/lymphoma/lymphoma.py
edsnlp/pipes/ner/disorders/lymphoma/patterns.py
edsnlp/pipes/ner/disorders/myocardial_infarction/__init__.py
edsnlp/pipes/ner/disorders/myocardial_infarction/factory.py
edsnlp/pipes/ner/disorders/myocardial_infarction/myocardial_infarction.py
edsnlp/pipes/ner/disorders/myocardial_infarction/patterns.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/__init__.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/factory.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/patterns.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/peptic_ulcer_disease.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/__init__.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/factory.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/patterns.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/peripheral_vascular_disease.py
edsnlp/pipes/ner/disorders/solid_tumor/__init__.py
edsnlp/pipes/ner/disorders/solid_tumor/factory.py
edsnlp/pipes/ner/disorders/solid_tumor/patterns.py
edsnlp/pipes/ner/disorders/solid_tumor/solid_tumor.py
edsnlp/pipes/ner/drugs/__init__.py
edsnlp/pipes/ner/drugs/factory.py
edsnlp/pipes/ner/drugs/patterns.py
edsnlp/pipes/ner/scores/__init__.py
edsnlp/pipes/ner/scores/base_score.py
edsnlp/pipes/ner/scores/factory.py
edsnlp/pipes/ner/scores/charlson/__init__.py
edsnlp/pipes/ner/scores/charlson/factory.py
edsnlp/pipes/ner/scores/charlson/patterns.py
edsnlp/pipes/ner/scores/elston_ellis/__init__.py
edsnlp/pipes/ner/scores/elston_ellis/factory.py
edsnlp/pipes/ner/scores/elston_ellis/patterns.py
edsnlp/pipes/ner/scores/emergency/__init__.py
edsnlp/pipes/ner/scores/emergency/ccmu/__init__.py
edsnlp/pipes/ner/scores/emergency/ccmu/factory.py
edsnlp/pipes/ner/scores/emergency/ccmu/patterns.py
edsnlp/pipes/ner/scores/emergency/gemsa/__init__.py
edsnlp/pipes/ner/scores/emergency/gemsa/factory.py
edsnlp/pipes/ner/scores/emergency/gemsa/patterns.py
edsnlp/pipes/ner/scores/emergency/priority/__init__.py
edsnlp/pipes/ner/scores/emergency/priority/factory.py
edsnlp/pipes/ner/scores/emergency/priority/patterns.py
edsnlp/pipes/ner/scores/sofa/__init__.py
edsnlp/pipes/ner/scores/sofa/factory.py
edsnlp/pipes/ner/scores/sofa/patterns.py
edsnlp/pipes/ner/scores/sofa/sofa.py
edsnlp/pipes/ner/tnm/__init__.py
edsnlp/pipes/ner/tnm/factory.py
edsnlp/pipes/ner/tnm/model.py
edsnlp/pipes/ner/tnm/patterns.py
edsnlp/pipes/ner/tnm/tnm.py
edsnlp/pipes/ner/umls/__init__.py
edsnlp/pipes/ner/umls/factory.py
edsnlp/pipes/ner/umls/patterns.py
edsnlp/pipes/qualifiers/__init__.py
edsnlp/pipes/qualifiers/base.py
edsnlp/pipes/qualifiers/family/__init__.py
edsnlp/pipes/qualifiers/family/factory.py
edsnlp/pipes/qualifiers/family/family.py
edsnlp/pipes/qualifiers/family/patterns.py
edsnlp/pipes/qualifiers/history/__init__.py
edsnlp/pipes/qualifiers/history/factory.py
edsnlp/pipes/qualifiers/history/history.py
edsnlp/pipes/qualifiers/history/patterns.py
edsnlp/pipes/qualifiers/hypothesis/__init__.py
edsnlp/pipes/qualifiers/hypothesis/factory.py
edsnlp/pipes/qualifiers/hypothesis/hypothesis.py
edsnlp/pipes/qualifiers/hypothesis/patterns.py
edsnlp/pipes/qualifiers/negation/__init__.py
edsnlp/pipes/qualifiers/negation/factory.py
edsnlp/pipes/qualifiers/negation/negation.py
edsnlp/pipes/qualifiers/negation/patterns.py
edsnlp/pipes/qualifiers/reported_speech/__init__.py
edsnlp/pipes/qualifiers/reported_speech/factory.py
edsnlp/pipes/qualifiers/reported_speech/patterns.py
edsnlp/pipes/qualifiers/reported_speech/reported_speech.py
edsnlp/pipes/trainable/__init__.py
edsnlp/pipes/trainable/embeddings/__init__.py
edsnlp/pipes/trainable/embeddings/typing.py
edsnlp/pipes/trainable/embeddings/span_pooler/__init__.py
edsnlp/pipes/trainable/embeddings/span_pooler/factory.py
edsnlp/pipes/trainable/embeddings/span_pooler/span_pooler.py
edsnlp/pipes/trainable/embeddings/text_cnn/__init__.py
edsnlp/pipes/trainable/embeddings/text_cnn/factory.py
edsnlp/pipes/trainable/embeddings/text_cnn/text_cnn.py
edsnlp/pipes/trainable/embeddings/transformer/__init__.py
edsnlp/pipes/trainable/embeddings/transformer/factory.py
edsnlp/pipes/trainable/embeddings/transformer/transformer.py
edsnlp/pipes/trainable/layers/__init__.py
edsnlp/pipes/trainable/layers/crf.py
edsnlp/pipes/trainable/layers/metric.py
edsnlp/pipes/trainable/layers/text_cnn.py
edsnlp/pipes/trainable/ner_crf/__init__.py
edsnlp/pipes/trainable/ner_crf/factory.py
edsnlp/pipes/trainable/ner_crf/ner_crf.py
edsnlp/pipes/trainable/span_linker/__init__.py
edsnlp/pipes/trainable/span_linker/factory.py
edsnlp/pipes/trainable/span_linker/span_linker.py
edsnlp/pipes/trainable/span_qualifier/__init__.py
edsnlp/pipes/trainable/span_qualifier/factory.py
edsnlp/pipes/trainable/span_qualifier/span_qualifier.py
edsnlp/processing/__init__.py
edsnlp/processing/deprecated_pipe.py
edsnlp/processing/multiprocessing.py
edsnlp/processing/simple.py
edsnlp/processing/spark.py
edsnlp/resources/AVC.csv.gz
edsnlp/resources/adicap.json.gz
edsnlp/resources/cim10.csv.gz
edsnlp/resources/drugs.json
edsnlp/resources/verbs.csv.gz
edsnlp/scorers/__init__.py
edsnlp/scorers/ner.py
edsnlp/scorers/span_classification.py
edsnlp/utils/__init__.py
edsnlp/utils/batching.py
edsnlp/utils/bindings.py
edsnlp/utils/collections.py
edsnlp/utils/deprecation.py
edsnlp/utils/doc_to_text.py
edsnlp/utils/examples.py
edsnlp/utils/extensions.py
edsnlp/utils/file_system.py
edsnlp/utils/filter.py
edsnlp/utils/inclusion.py
edsnlp/utils/lazy_module.py
edsnlp/utils/numbers.py
edsnlp/utils/package.py
edsnlp/utils/regex.py
edsnlp/utils/resources.py
edsnlp/utils/span_getters.py
edsnlp/utils/spark_dtypes.py
edsnlp/utils/torch.py
edsnlp/utils/typing.py
edsnlp/viz/__init__.py
edsnlp/viz/quick_examples.py
notebooks/context.py
notebooks/connectors/context.py
notebooks/dates/context.py
notebooks/normalizer/context.py
notebooks/sections/context.py
notebooks/sentences/context.py
notebooks/tokenizer/context.py
notebooks/utilities/context.py
scripts/adicap.py
scripts/cim10.py
scripts/conjugate_verbs.py
scripts/context.py
scripts/serve.py
tests/conftest.py
tests/extract_docs_code.py
tests/helpers.py
tests/test_conjugator.py
tests/test_docs.py
tests/test_entrypoints.py
tests/test_language.py
tests/test_pipeline.py
tests/test_scorers.py
tests/test_span_args.py
tests/connectors/test_labeltool.py
tests/connectors/test_omop.py
tests/data/test_converters.py
tests/data/test_json.py
tests/data/test_lazy_collection.py
tests/data/test_pandas.py
tests/data/test_parquet.py
tests/data/test_polars.py
tests/data/test_spark.py
tests/data/test_standoff.py
tests/matchers/test_phrase.py
tests/matchers/test_regex.py
tests/matchers/test_simstring.py
tests/pipelines/test_pipelines.py
tests/pipelines/core/test_contextual_matcher.py
tests/pipelines/core/test_endlines.py
tests/pipelines/core/test_matcher.py
tests/pipelines/core/test_normalisation.py
tests/pipelines/core/test_sentences.py
tests/pipelines/core/test_terminology.py
tests/pipelines/misc/test_consultation_date.py
tests/pipelines/misc/test_dates.py
tests/pipelines/misc/test_measurements.py
tests/pipelines/misc/test_reason.py
tests/pipelines/misc/test_sections.py
tests/pipelines/misc/test_tables.py
tests/pipelines/ner/test_adicap.py
tests/pipelines/ner/test_adicap_decoder.py
tests/pipelines/ner/test_cim10.py
tests/pipelines/ner/test_covid.py
tests/pipelines/ner/test_drugs.py
tests/pipelines/ner/test_score.py
tests/pipelines/ner/test_tnm.py
tests/pipelines/ner/test_umls.py
tests/pipelines/ner/test_value_extension.py
tests/pipelines/ner/disorders/AIDS.py
tests/pipelines/ner/disorders/CKD.py
tests/pipelines/ner/disorders/COPD.py
tests/pipelines/ner/disorders/alcohol.py
tests/pipelines/ner/disorders/cerebrovascular_accident.py
tests/pipelines/ner/disorders/congestive_heart_failure.py
tests/pipelines/ner/disorders/connective_tissue_disease.py
tests/pipelines/ner/disorders/dementia.py
tests/pipelines/ner/disorders/diabetes.py
tests/pipelines/ner/disorders/hemiplegia.py
tests/pipelines/ner/disorders/leukemia.py
tests/pipelines/ner/disorders/liver_disease.py
tests/pipelines/ner/disorders/lymphoma.py
tests/pipelines/ner/disorders/myocardial_infarction.py
tests/pipelines/ner/disorders/peptic_ulcer_disease.py
tests/pipelines/ner/disorders/peripheral_vascular_disease.py
tests/pipelines/ner/disorders/solid_tumor.py
tests/pipelines/ner/disorders/test_all.py
tests/pipelines/ner/disorders/tobacco.py
tests/pipelines/qualifiers/conftest.py
tests/pipelines/qualifiers/test_family.py
tests/pipelines/qualifiers/test_history.py
tests/pipelines/qualifiers/test_hypothesis.py
tests/pipelines/qualifiers/test_negation.py
tests/pipelines/qualifiers/test_reported_speech.py
tests/pipelines/trainable/test_ner.py
tests/pipelines/trainable/test_span_linker.py
tests/pipelines/trainable/test_span_qualifier.py
tests/pipelines/trainable/test_transformer.py
tests/processing/test_backends.py
tests/processing/test_processing.py
tests/training/test_train.py
tests/utils/test_bindings.py
tests/utils/test_collections.py
tests/utils/test_examples.py
tests/utils/test_filter.py
tests/utils/test_package.py
tests/utils/test_quick_examples.py
tests/utils/test_span_getters.py
tests/utils/test_spark_dtypes.py
tests/utils/test_typing.py