.flake8
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
LICENSE
README.md
_echopop_version.py
environment.yaml
pyproject.toml
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
.github/workflows/pr.yaml
.github/workflows/pypi.yaml
config_files/initialization_config.yml
config_files/survey_year_2019_config.yml
docs/_config.yml
docs/_toc.yml
docs/algo.md
docs/algo1.ipynb
docs/algo2.ipynb
docs/api.rst
docs/core_data_structure.md
docs/example_notebooks.md
docs/glossary.md
docs/index.md
docs/input_files.md
docs/install.md
docs/quick_start.ipynb
docs/references.bib
docs/requirements.txt
docs/theory.md
docs/example_notebooks/example_echopop_workflow.ipynb
docs/images/core_data_structure.jpg
docs/images/example_indexing.jpg
docs/images/length_age_sex_stratification.jpg
docs/images/length_age_stratification.jpg
docs/images/length_sex_stratification.jpg
docs/images/length_stratification.jpg
docs/images/noaa_fisheries_logo.png
docs/images/symbols.jpeg
docs/theory/acoustics.md
docs/theory/apportion.md
docs/theory/bio_estimates.md
docs/theory/kriging.md
docs/theory/kriging_eq.md
docs/theory/other.md
docs/theory/semivariogram_eq.md
docs/theory/stratification.md
echopop/__init__.py
echopop/_testing.py
echopop/acoustics.py
echopop/analysis.py
echopop/biology.py
echopop/core.py
echopop/statistics.py
echopop/survey.py
echopop.egg-info/PKG-INFO
echopop.egg-info/SOURCES.txt
echopop.egg-info/dependency_links.txt
echopop.egg-info/requires.txt
echopop.egg-info/top_level.txt
echopop/spatial/__init__.py
echopop/spatial/krige.py
echopop/spatial/mesh.py
echopop/spatial/projection.py
echopop/spatial/transect.py
echopop/spatial/variogram.py
echopop/test_data/config_files/config_init.yml
echopop/test_data/config_files/config_survey.yml
echopop/test_data/input_files/Biological/CAN/biodata_catch_CAN.xlsx
echopop/test_data/input_files/Biological/CAN/biodata_length_CAN.xlsx
echopop/test_data/input_files/Biological/CAN/biodata_specimen_CAN_AGES.xlsx
echopop/test_data/input_files/Biological/CAN/haul_to_transect_mapping_CAN.xlsx
echopop/test_data/input_files/Biological/US/biodata_catch.xlsx
echopop/test_data/input_files/Biological/US/biodata_length.xlsx
echopop/test_data/input_files/Biological/US/biodata_specimen_AGES.xlsx
echopop/test_data/input_files/Biological/US/haul_to_transect_mapping.xlsx
echopop/test_data/input_files/Exports/US_CAN_detailsa_table1y+_ALL_final - updated.xlsx
echopop/test_data/input_files/Exports/US_CAN_detailsa_table2y+_ALL_final - updated.xlsx
echopop/test_data/input_files/Kriging_files/default_vario_krig_settings_US_CAN.xlsx
echopop/test_data/input_files/Kriging_files/Kriging_grid_files/krig_grid2_5nm_cut_centroids_2013.xlsx
echopop/test_data/input_files/Kriging_files/Kriging_grid_files/transformation_isobath_coordinates.xlsx
echopop/test_data/input_files/Stratification/Stratification_geographic_Lat_final.xlsx
echopop/test_data/input_files/Stratification/US_CAN strata_final.xlsx
echopop/tests/__init__.py
echopop/tests/conftest.py
echopop/tests/test_acoustics.py
echopop/tests/test_biology.py
echopop/tests/test_data_loader.py
echopop/tests/test_data_transect_analysis.py
echopop/tests/test_kriging_biomass_apportionment.py
echopop/tests/test_kriging_functions.py
echopop/tests/test_operations.py
echopop/tests/test_standardize_coordinates.py
echopop/tests/test_stratified_summary.py
echopop/tests/test_transect_functions.py
echopop/utils/__init__.py
echopop/utils/data_structure_utils.py
echopop/utils/load.py
echopop/utils/message.py
echopop/utils/monkey_patch_dataframe.py
echopop/utils/operations.py
project_docs/2022_04_07_update.md