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.gitignore
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CHANGELOG.rst
Jenkinsfile
Makefile
README.rst
pyproject.toml
python_versions.json
pytype.cfg
setup.py
update_readme.py
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docs/Makefile
docs/nitpick-exceptions
docs/source/conf.py
docs/source/glossary.rst
docs/source/index.rst
docs/source/_static/style.css
docs/source/_templates/layout.html
docs/source/api_reference/cli.rst
docs/source/api_reference/configuration.rst
docs/source/api_reference/graph_components.rst
docs/source/api_reference/implementation.rst
docs/source/api_reference/index.rst
docs/source/api_reference/pipeline.rst
docs/source/api_reference/pipeline_graph.rst
docs/source/api_reference/pipeline_schema.rst
docs/source/api_reference/rule.rst
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docs/source/api_reference/step.rst
docs/source/api_reference/pipeline_schema_constants/development.rst
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docs/source/api_reference/pipeline_schema_constants/testing.rst
docs/source/api_reference/utilities/aggregator_utils.rst
docs/source/api_reference/utilities/data_utils.rst
docs/source/api_reference/utilities/general_utils.rst
docs/source/api_reference/utilities/index.rst
docs/source/api_reference/utilities/paths.rst
docs/source/api_reference/utilities/splitter_utils.rst
docs/source/api_reference/utilities/validation_utils.rst
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docs/source/user_guide/cli.rst
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src/easylink/__about__.py
src/easylink/__init__.py
src/easylink/_version.py
src/easylink/cli.py
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src/easylink/runner.py
src/easylink/step.py
src/easylink.egg-info/PKG-INFO
src/easylink.egg-info/SOURCES.txt
src/easylink.egg-info/dependency_links.txt
src/easylink.egg-info/entry_points.txt
src/easylink.egg-info/not-zip-safe
src/easylink.egg-info/requires.txt
src/easylink.egg-info/top_level.txt
src/easylink/images/spark_cluster/Dockerfile
src/easylink/images/spark_cluster/README.md
src/easylink/pipeline_schema_constants/__init__.py
src/easylink/pipeline_schema_constants/development.py
src/easylink/pipeline_schema_constants/testing.py
src/easylink/steps/dev/README.md
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src/easylink/steps/dev/python_pandas/README.md
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src/easylink/steps/dev/python_pyspark/README.md
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src/easylink/steps/dev/r/README.md
src/easylink/steps/dev/r/dummy_step.R
src/easylink/steps/dev/r/r-image.def
src/easylink/utilities/__init__.py
src/easylink/utilities/aggregator_utils.py
src/easylink/utilities/data_utils.py
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src/easylink/utilities/paths.py
src/easylink/utilities/spark.smk
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tests/integration/test_snakemake_spark.py
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tests/unit/rule_strings/aggregation_rule.txt
tests/unit/rule_strings/checkpoint_rule.txt
tests/unit/rule_strings/embarrassingly_parallel_rule.txt
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