click
docker
graphviz
loguru
layered_config_tree>=3.0.0
networkx
pandas
pyyaml
pyarrow
requests
snakemake>=8.0.0
tqdm
snakemake-interface-executor-plugins<9.0.0
snakemake-executor-plugin-slurm
pandas-stubs
pyarrow-stubs
types-PyYAML

[dev]
sphinx<8.2.0
sphinx-rtd-theme
sphinx-autodoc-typehints
sphinx-click
sphinx-autobuild
typing_extensions
pytest
pytest-cov
pytest-mock
black==22.3.0
isort
mypy

[docs]
sphinx<8.2.0
sphinx-rtd-theme
sphinx-autodoc-typehints
sphinx-click
sphinx-autobuild
typing_extensions

[test]
pytest
pytest-cov
pytest-mock
