LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
src/eastr/__init__.py
src/eastr/alignment_utils.py
src/eastr/extract_junctions.py
src/eastr/get_spurious_introns.py
src/eastr/output_utils.py
src/eastr/run_eastr.py
src/eastr/utils.py
src/eastr.egg-info/PKG-INFO
src/eastr.egg-info/SOURCES.txt
src/eastr.egg-info/dependency_links.txt
src/eastr.egg-info/entry_points.txt
src/eastr.egg-info/requires.txt
src/eastr.egg-info/top_level.txt
utils/CMakeLists.txt
utils/README.md
utils/include/gclib/.git
utils/include/gclib/.gitignore
utils/include/gclib/GAlnExtend.cpp
utils/include/gclib/GAlnExtend.h
utils/include/gclib/GArgs.cpp
utils/include/gclib/GArgs.h
utils/include/gclib/GBam.cpp
utils/include/gclib/GBam.h
utils/include/gclib/GBase.cpp
utils/include/gclib/GBase.h
utils/include/gclib/GBitVec.h
utils/include/gclib/GCdbYank.cpp
utils/include/gclib/GCdbYank.h
utils/include/gclib/GFaSeqGet.cpp
utils/include/gclib/GFaSeqGet.h
utils/include/gclib/GFastaFile.h
utils/include/gclib/GFastaIndex.cpp
utils/include/gclib/GFastaIndex.h
utils/include/gclib/GHash.hh
utils/include/gclib/GHashMap.hh
utils/include/gclib/GIntHash.hh
utils/include/gclib/GIntervalTree.hh
utils/include/gclib/GList.hh
utils/include/gclib/GResUsage.cpp
utils/include/gclib/GResUsage.h
utils/include/gclib/GStr.cpp
utils/include/gclib/GStr.h
utils/include/gclib/GThreads.cpp
utils/include/gclib/GThreads.h
utils/include/gclib/GVec.hh
utils/include/gclib/GapAssem.cpp
utils/include/gclib/GapAssem.h
utils/include/gclib/LICENSE.txt
utils/include/gclib/Makefile
utils/include/gclib/README.md
utils/include/gclib/codons.cpp
utils/include/gclib/codons.h
utils/include/gclib/gcdb.cpp
utils/include/gclib/gcdb.h
utils/include/gclib/gdimg.cpp
utils/include/gclib/gdimg.h
utils/include/gclib/gdna.cpp
utils/include/gclib/gdna.h
utils/include/gclib/gff.cpp
utils/include/gclib/gff.h
utils/include/gclib/gsocket.cpp
utils/include/gclib/gsocket.h
utils/include/gclib/gstopwatch.cpp
utils/include/gclib/gstopwatch.h
utils/include/gclib/gtest.cpp
utils/include/gclib/htest.cpp
utils/include/gclib/khashl.hh
utils/include/gclib/mdtest.cpp
utils/include/gclib/proc_mem.cpp
utils/include/gclib/proc_mem.h
utils/include/gclib/tag_git.sh
utils/include/gclib/wyhash.h
utils/include/gclib/xxhash.h
utils/src/GSam.cpp
utils/src/GSam.h
utils/src/commons.h
utils/src/junction_extractor.cpp
utils/src/tmerge.cpp
utils/src/tmerge.h
utils/src/vacuum.cpp