MANIFEST.in
Readme.md
requirements.txt
requirements_setuptools.txt
requirements_test.txt
setup.cfg
setup.py
/home/kjensen/dx-toolkit/src/python/scripts/dx-clone-asset
/home/kjensen/dx-toolkit/src/python/scripts/dx-docker

/home/kjensen/dx-toolkit/src/python/scripts/dx-log-stream
/home/kjensen/dx-toolkit/src/python/scripts/dx-mount-all-inputs
/home/kjensen/dx-toolkit/src/python/scripts/dx-notebook-reconnect
/home/kjensen/dx-toolkit/src/python/scripts/dx-print-bash-vars
/home/kjensen/dx-toolkit/src/python/scripts/dx-upload-all-outputs
dxpy/__init__.py
dxpy/api.py
dxpy/app_builder.py
dxpy/app_categories.py
dxpy/asset_builder.py
dxpy/compat.py
dxpy/dxlog.py
dxpy/exceptions.py
dxpy/executable_builder.py
dxpy/ssh_tunnel_app_support.py
dxpy/system_requirements.py
dxpy/toolkit_version.py
dxpy/workflow_builder.py
dxpy.egg-info/PKG-INFO
dxpy.egg-info/SOURCES.txt
dxpy.egg-info/dependency_links.txt
dxpy.egg-info/entry_points.txt
dxpy.egg-info/not-zip-safe
dxpy.egg-info/requires.txt
dxpy.egg-info/top_level.txt
dxpy/bindings/__init__.py
dxpy/bindings/auth.py
dxpy/bindings/download_all_inputs.py
dxpy/bindings/dxanalysis.py
dxpy/bindings/dxapp.py
dxpy/bindings/dxapp_container_functions.py
dxpy/bindings/dxapplet.py
dxpy/bindings/dxdatabase.py
dxpy/bindings/dxdatabase_functions.py
dxpy/bindings/dxdataobject_functions.py
dxpy/bindings/dxfile.py
dxpy/bindings/dxfile_functions.py
dxpy/bindings/dxglobalworkflow.py
dxpy/bindings/dxjob.py
dxpy/bindings/dxproject.py
dxpy/bindings/dxrecord.py
dxpy/bindings/dxworkflow.py
dxpy/bindings/mount_all_inputs.py
dxpy/bindings/search.py
dxpy/bindings/apollo/__init__.py
dxpy/bindings/apollo/cmd_line_options_validator.py
dxpy/bindings/apollo/data_transformations.py
dxpy/bindings/apollo/dataset.py
dxpy/bindings/apollo/json_validation_by_schema.py
dxpy/bindings/apollo/vizclient.py
dxpy/bindings/apollo/vizserver_filters_from_json_parser.py
dxpy/bindings/apollo/vizserver_payload_builder.py
dxpy/bindings/apollo/schemas/__init__.py
dxpy/bindings/apollo/schemas/assay_filtering_conditions.py
dxpy/bindings/apollo/schemas/assay_filtering_json_schemas.py
dxpy/bindings/apollo/schemas/input_arguments_validation_schemas.py
dxpy/cli/__init__.py
dxpy/cli/cp.py
dxpy/cli/dataset_utilities.py
dxpy/cli/download.py
dxpy/cli/exec_io.py
dxpy/cli/help_messages.py
dxpy/cli/org.py
dxpy/cli/output_handling.py
dxpy/cli/parsers.py
dxpy/cli/workflow.py
dxpy/dx_extract_utils/Homo_sapiens_genes_manifest.json
dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging.json
dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging_vep.json
dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_vep.json
dxpy/dx_extract_utils/__init__.py
dxpy/dx_extract_utils/cohort_filter_payload.py
dxpy/dx_extract_utils/column_conditions.json
dxpy/dx_extract_utils/column_conversion.json
dxpy/dx_extract_utils/filter_to_payload.py
dxpy/dx_extract_utils/germline_utils.py
dxpy/dx_extract_utils/input_validation.py
dxpy/dx_extract_utils/input_validation_somatic.py
dxpy/dx_extract_utils/retrieve_allele_schema.json
dxpy/dx_extract_utils/retrieve_annotation_schema.json
dxpy/dx_extract_utils/retrieve_bins.py
dxpy/dx_extract_utils/retrieve_genotype_schema.json
dxpy/dx_extract_utils/return_columns_allele.json
dxpy/dx_extract_utils/return_columns_annotation.json
dxpy/dx_extract_utils/return_columns_genotype.json
dxpy/dx_extract_utils/return_columns_genotype_only.json
dxpy/dx_extract_utils/somatic_filter_payload.py
dxpy/nextflow/ImageRef.py
dxpy/nextflow/ImageRefFactory.py
dxpy/nextflow/__init__.py
dxpy/nextflow/app_asset_projects_ids_prod.json
dxpy/nextflow/app_asset_projects_ids_staging.json
dxpy/nextflow/awscli_assets.json
dxpy/nextflow/awscli_assets.staging.json
dxpy/nextflow/collect_images.py
dxpy/nextflow/nextaur_assets.json
dxpy/nextflow/nextaur_assets.staging.json
dxpy/nextflow/nextflow_assets.json
dxpy/nextflow/nextflow_assets.staging.json
dxpy/nextflow/nextflow_builder.py
dxpy/nextflow/nextflow_templates.py
dxpy/nextflow/nextflow_utils.py
dxpy/packages/__init__.py
dxpy/scripts/__init__.py
dxpy/scripts/dx.py
dxpy/scripts/dx_app_wizard.py
dxpy/scripts/dx_build_app.py
dxpy/scripts/dx_build_applet.py
dxpy/templating/__init__.py
dxpy/templating/bash.py
dxpy/templating/python.py
dxpy/templating/utils.py
dxpy/templating/templates/Readme.md
dxpy/templating/templates/bash/basic/dxapp.json
dxpy/templating/templates/bash/basic/src/code.sh
dxpy/templating/templates/bash/parallelized/dxapp.json
dxpy/templating/templates/bash/parallelized/src/code.sh
dxpy/templating/templates/bash/scatter-process-gather/dxapp.json
dxpy/templating/templates/bash/scatter-process-gather/src/code.sh
dxpy/templating/templates/nextflow/dxapp.json
dxpy/templating/templates/nextflow/src/nextflow.sh
dxpy/templating/templates/python/basic/dxapp.json
dxpy/templating/templates/python/basic/src/code.py
dxpy/templating/templates/python/basic/test/test.py
dxpy/templating/templates/python/parallelized/dxapp.json
dxpy/templating/templates/python/parallelized/src/code.py
dxpy/templating/templates/python/parallelized/test/test.py
dxpy/templating/templates/python/scatter-process-gather/dxapp.json
dxpy/templating/templates/python/scatter-process-gather/src/code.py
dxpy/templating/templates/python/scatter-process-gather/test/test.py
dxpy/utils/__init__.py
dxpy/utils/batch_utils.py
dxpy/utils/completer.py
dxpy/utils/config.py
dxpy/utils/describe.py
dxpy/utils/exec_utils.py
dxpy/utils/executable_unbuilder.py
dxpy/utils/file_handle.py
dxpy/utils/file_load_utils.py
dxpy/utils/genomic_utils.py
dxpy/utils/job_log_client.py
dxpy/utils/local_exec_utils.py
dxpy/utils/pathmatch.py
dxpy/utils/pretty_print.py
dxpy/utils/printing.py
dxpy/utils/resolver.py
dxpy/utils/spelling_corrector.py
dxpy/utils/version.py
scripts/dx-clone-asset
scripts/dx-docker
scripts/dx-download-all-inputs
scripts/dx-fetch-bundled-depends
scripts/dx-generate-dxapp
scripts/dx-jobutil-add-output
scripts/dx-jobutil-dxlink
scripts/dx-jobutil-get-identity-token
scripts/dx-jobutil-new-job
scripts/dx-jobutil-parse-link
scripts/dx-jobutil-report-error
scripts/dx-log-stream
scripts/dx-mount-all-inputs
scripts/dx-notebook-reconnect
scripts/dx-print-bash-vars
scripts/dx-upload-all-outputs
test/test_batch.py
test/test_create_cohort.py
test/test_describe.py
test/test_dx-docker.py
test/test_dx_app_wizard.py
test/test_dx_bash_helpers.py
test/test_dx_completion.py
test/test_dx_symlink.py
test/test_dxabs.py
test/test_dxasset.py
test/test_dxclient.py
test/test_dxpy.py
test/test_dxpy_utils.py
test/test_dxunpack.py
test/test_extract_assay.py
test/test_extract_dataset.py
test/test_extract_expression.py
test/test_extract_somatic.py
test/test_nextflow.py
test/test_nextflow_ImageRef.py
test/test_nextflow_ImageRefFactory.py