CHANGES.rst
LICENSE.txt
MANIFEST.in
README.rst
VERSION
requirements.txt
setup.cfg
setup.py
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
dupliganger/__init__.py
dupliganger/__main__.py
dupliganger/annotate_qtrim.py
dupliganger/barcode_split_quality_filter_umi_anno.py
dupliganger/build_read_and_loc_dbs.py
dupliganger/command_line.py
dupliganger/common.py
dupliganger/constants.py
dupliganger/db.py
dupliganger/dedup.py
dupliganger/dupliganger.py
dupliganger/exceptions.py
dupliganger/qtrim.py
dupliganger/remove_adapter.py
dupliganger/remove_umi.py
dupliganger/sam.py
dupliganger.egg-info/PKG-INFO
dupliganger.egg-info/SOURCES.txt
dupliganger.egg-info/dependency_links.txt
dupliganger.egg-info/entry_points.txt
dupliganger.egg-info/requires.txt
dupliganger.egg-info/top_level.txt
dupliganger.egg-info/zip-safe
dupliganger/test/common.py
dupliganger/test/test_annotate_qtrim.py
dupliganger/test/test_barcode_split_quality_filter_umi_anno.py
dupliganger/test/test_build_read_and_loc_dbs.py
dupliganger/test/test_dedup.py
dupliganger/test/test_parse_cigar.py
dupliganger/test/test_qtrim.py
dupliganger/test/test_remove_adapter.py
dupliganger/test/test_remove_umi.py
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dupliganger/test/files/barcode_split_quality_filter_umi_anno/in/barcodes.samples.txt
dupliganger/test/files/barcode_split_quality_filter_umi_anno/in/barcodes.txt
dupliganger/test/files/barcode_split_quality_filter_umi_anno/in/samples.barcodes.txt
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