LICENSE
README.md
README.rst
setup.cfg
setup.py
./dtiplayground/__init__.py
./dtiplayground/config.py
./dtiplayground/__pycache__/__init__.cpython-38.pyc
./dtiplayground/__pycache__/config.cpython-38.pyc
./dtiplayground/api/__init__.py
./dtiplayground/api/dmriatlasbuilder.py
./dtiplayground/api/dmriprep.py
./dtiplayground/api/filebrowser.py
./dtiplayground/api/server.py
./dtiplayground/api/utils.py
./dtiplayground/api/__pycache__/__init__.cpython-38.pyc
./dtiplayground/api/__pycache__/filebrowser.cpython-38.pyc
./dtiplayground/api/__pycache__/utils.cpython-38.pyc
./dtiplayground/api/static/__init__.py
./dtiplayground/api/static/spa/__init__.py
./dtiplayground/api/static/spa/spa.zip
./dtiplayground/dmri/__init__.py
./dtiplayground/dmri/__init__.pyc
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./dtiplayground/dmri/atlasbuilder/__init__.py
./dtiplayground/dmri/atlasbuilder/atlasbuilder.py
./dtiplayground/dmri/atlasbuilder/utils.py
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./dtiplayground/dmri/atlasbuilder/data/GreedyAtlasParameters.xml
./dtiplayground/dmri/atlasbuilder/data/__init__.py
./dtiplayground/dmri/common/__init__.py
./dtiplayground/dmri/common/dwi.py
./dtiplayground/dmri/common/module.py
./dtiplayground/dmri/common/pipeline.py
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./dtiplayground/dmri/common/tools/__init__.py
./dtiplayground/dmri/common/tools/base.py
./dtiplayground/dmri/common/tools/brainsfit.py
./dtiplayground/dmri/common/tools/crop_dti.py
./dtiplayground/dmri/common/tools/dti_reg.py
./dtiplayground/dmri/common/tools/dtiaverage.py
./dtiplayground/dmri/common/tools/dtiestim.py
./dtiplayground/dmri/common/tools/dtiprocess.py
./dtiplayground/dmri/common/tools/fiberprocess.py
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./dtiplayground/dmri/common/tools/greedy_atlas.py
./dtiplayground/dmri/common/tools/image_math.py
./dtiplayground/dmri/common/tools/itk_transform_tools.py
./dtiplayground/dmri/common/tools/niral_utilities.py
./dtiplayground/dmri/common/tools/resample_dti_log_euclidean.py
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./dtiplayground/dmri/preprocessing/docs/objects.yml
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./dtiplayground/dmri/preprocessing/modules/BRAIN_Mask/BRAIN_Mask.py
./dtiplayground/dmri/preprocessing/modules/BRAIN_Mask/BRAIN_Mask.yml
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./dtiplayground/dmri/preprocessing/modules/BRAIN_Tractography/BRAIN_Tractography.py
./dtiplayground/dmri/preprocessing/modules/BRAIN_Tractography/BRAIN_Tractography.yml
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./dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/EDDYMOTION_Correct.py
./dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/EDDYMOTION_Correct.yml
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./dtiplayground/dmri/preprocessing/modules/INTERLACE_Check/INTERLACE_Check.py
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./dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/MANUAL_Exclude.py
./dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/MANUAL_Exclude.yml
./dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/README.md
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./dtiplayground/dmri/preprocessing/modules/QC_Report/QC_Report.py
./dtiplayground/dmri/preprocessing/modules/QC_Report/QC_Report.yml
./dtiplayground/dmri/preprocessing/modules/QC_Report/README.md
./dtiplayground/dmri/preprocessing/modules/QC_Report/__init__.py
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./dtiplayground/dmri/preprocessing/modules/QC_Report/__pycache__/__init__.cpython-38.pyc
./dtiplayground/dmri/preprocessing/modules/SLICE_Check/README.md
./dtiplayground/dmri/preprocessing/modules/SLICE_Check/SLICE_Check.py
./dtiplayground/dmri/preprocessing/modules/SLICE_Check/SLICE_Check.yml
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./dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/README.md
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./dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/data/fsl_regb02b0.cnf
./dtiplayground/dmri/preprocessing/modules/UTIL_Merge/README.md
./dtiplayground/dmri/preprocessing/modules/UTIL_Merge/UTIL_Merge.py
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./dtiplayground/ui/__init__.py
./dtiplayground/ui/dmriprepUI.py
./dtiplayground/ui/dmriprepwindow.py
./dtiplayground/ui/executiontab.py
./dtiplayground/ui/general_tab.py
./dtiplayground/ui/loadingbutton.py
./dtiplayground/ui/module_selector_tab.py
./dtiplayground/ui/modules_details_communicate.py
./dtiplayground/ui/modules_details_tab.py
./dtiplayground/ui/protocol.py
./dtiplayground/ui/protocoltab.py
./dtiplayground/ui/quickview.py
./dtiplayground/ui/softwarepaths.py
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./dtiplayground/ui/data/__init__.py
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./dtiplayground/ui/modules_details/__init__.py
./dtiplayground/ui/modules_details/baselineaverage.py
./dtiplayground/ui/modules_details/brainmask.py
./dtiplayground/ui/modules_details/braintractography.py
./dtiplayground/ui/modules_details/dtiestimate.py
./dtiplayground/ui/modules_details/dtiregister.py
./dtiplayground/ui/modules_details/eddymotion.py
./dtiplayground/ui/modules_details/exclude.py
./dtiplayground/ui/modules_details/interlacecheck.py
./dtiplayground/ui/modules_details/nomodule.py
./dtiplayground/ui/modules_details/qcreport.py
./dtiplayground/ui/modules_details/singletract.py
./dtiplayground/ui/modules_details/slicecheck.py
./dtiplayground/ui/modules_details/susceptibility.py
./dtiplayground/ui/modules_details/utilheader.py
./dtiplayground/ui/modules_details/utilmerge.py
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./dtiplayground/ui/modules_details/__pycache__/dtiestimate.cpython-38.pyc
./dtiplayground/ui/modules_details/__pycache__/dtiregister.cpython-38.pyc
./dtiplayground/ui/modules_details/__pycache__/eddymotion.cpython-38.pyc
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bin/__pycache__
bin/dmriatlas
bin/dmriatlas.py
bin/dmriautotract
bin/dmriautotract.py
bin/dmrifiberprofile
bin/dmrifiberprofile.py
bin/dmriplayground
bin/dmriplayground.py
bin/dmriprep
bin/dmriprep-ui
bin/dmriprep-ui.py
bin/dmriprep.py
bin/fslinstaller.py
dtiplayground/__init__.py
dtiplayground/config.py
dtiplayground.egg-info/PKG-INFO
dtiplayground.egg-info/SOURCES.txt
dtiplayground.egg-info/dependency_links.txt
dtiplayground.egg-info/requires.txt
dtiplayground.egg-info/top_level.txt
dtiplayground/api/__init__.py
dtiplayground/api/filebrowser.py
dtiplayground/api/utils.py
dtiplayground/dmri/__init__.py
dtiplayground/dmri/atlasbuilder/__init__.py
dtiplayground/dmri/atlasbuilder/atlasbuilder.py
dtiplayground/dmri/atlasbuilder/utils.py
dtiplayground/dmri/common/__init__.py
dtiplayground/dmri/common/dwi.py
dtiplayground/dmri/common/module.py
dtiplayground/dmri/common/pipeline.py
dtiplayground/dmri/common/data/__init__.py
dtiplayground/dmri/common/data/software_paths.yml
dtiplayground/dmri/common/study/__init__.py
dtiplayground/dmri/common/study/loaders.py
dtiplayground/dmri/common/tools/__init__.py
dtiplayground/dmri/common/tools/base.py
dtiplayground/dmri/common/tools/brainsfit.py
dtiplayground/dmri/common/tools/crop_dti.py
dtiplayground/dmri/common/tools/dti_reg.py
dtiplayground/dmri/common/tools/dtiaverage.py
dtiplayground/dmri/common/tools/dtiestim.py
dtiplayground/dmri/common/tools/dtiprocess.py
dtiplayground/dmri/common/tools/fiberprocess.py
dtiplayground/dmri/common/tools/fsl.py
dtiplayground/dmri/common/tools/greedy_atlas.py
dtiplayground/dmri/common/tools/image_math.py
dtiplayground/dmri/common/tools/itk_transform_tools.py
dtiplayground/dmri/common/tools/niral_utilities.py
dtiplayground/dmri/common/tools/resample_dti_log_euclidean.py
dtiplayground/dmri/common/tools/unu.py
dtiplayground/dmri/fiberprofile/__init__.py
dtiplayground/dmri/fiberprofile/protocols.py
dtiplayground/dmri/fiberprofile/modules/__init__.py
dtiplayground/dmri/fiberprofile/modules/IDENTITY_Process/IDENTITY_Process.py
dtiplayground/dmri/fiberprofile/modules/IDENTITY_Process/__init__.py
dtiplayground/dmri/fiberprofile/templates/__init__.py
dtiplayground/dmri/fiberprofile/templates/module_template.py
dtiplayground/dmri/preprocessing/__init__.py
dtiplayground/dmri/preprocessing/protocols.py
dtiplayground/dmri/preprocessing/modules/__init__.py
dtiplayground/dmri/preprocessing/modules/BASELINE_Average/BASELINE_Average.py
dtiplayground/dmri/preprocessing/modules/BASELINE_Average/__init__.py
dtiplayground/dmri/preprocessing/modules/BRAIN_Mask/BRAIN_Mask.py
dtiplayground/dmri/preprocessing/modules/BRAIN_Mask/__init__.py
dtiplayground/dmri/preprocessing/modules/BRAIN_Tractography/BRAIN_Tractography.py
dtiplayground/dmri/preprocessing/modules/BRAIN_Tractography/__init__.py
dtiplayground/dmri/preprocessing/modules/DTI_Estimate/DTI_Estimate.py
dtiplayground/dmri/preprocessing/modules/DTI_Estimate/__init__.py
dtiplayground/dmri/preprocessing/modules/DTI_Register/DTI_Register.py
dtiplayground/dmri/preprocessing/modules/DTI_Register/__init__.py
dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/EDDYMOTION_Correct.py
dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/__init__.py
dtiplayground/dmri/preprocessing/modules/IDENTITY_Process/IDENTITY_Process.py
dtiplayground/dmri/preprocessing/modules/IDENTITY_Process/__init__.py
dtiplayground/dmri/preprocessing/modules/INTERLACE_Check/INTERLACE_Check.py
dtiplayground/dmri/preprocessing/modules/INTERLACE_Check/__init__.py
dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/MANUAL_Exclude.py
dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/__init__.py
dtiplayground/dmri/preprocessing/modules/QC_Report/QC_Report.py
dtiplayground/dmri/preprocessing/modules/QC_Report/__init__.py
dtiplayground/dmri/preprocessing/modules/SLICE_Check/SLICE_Check.py
dtiplayground/dmri/preprocessing/modules/SLICE_Check/__init__.py
dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/SUSCEPTIBILITY_Correct.py
dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/__init__.py
dtiplayground/dmri/preprocessing/modules/UTIL_Merge/UTIL_Merge.py
dtiplayground/dmri/preprocessing/modules/UTIL_Merge/__init__.py
dtiplayground/dmri/preprocessing/templates/__init__.py
dtiplayground/dmri/preprocessing/templates/module_template.py
dtiplayground/dmri/preprocessing/templates/protocol_template.yml
dtiplayground/dmri/tractography/__init__.py
dtiplayground/dmri/tractography/protocols.py
dtiplayground/dmri/tractography/modules/__init__.py
dtiplayground/dmri/tractography/templates/__init__.py
dtiplayground/dmri/tractography/templates/module_template.py
dtiplayground/ui/__init__.py
dtiplayground/ui/dmriprepUI.py
dtiplayground/ui/dmriprepwindow.py
dtiplayground/ui/executiontab.py
dtiplayground/ui/general_tab.py
dtiplayground/ui/loadingbutton.py
dtiplayground/ui/module_selector_tab.py
dtiplayground/ui/modules_details_communicate.py
dtiplayground/ui/modules_details_tab.py
dtiplayground/ui/protocol.py
dtiplayground/ui/protocoltab.py
dtiplayground/ui/quickview.py
dtiplayground/ui/softwarepaths.py
dtiplayground/ui/data/__init__.py
dtiplayground/ui/modules_details/__init__.py
dtiplayground/ui/modules_details/baselineaverage.py
dtiplayground/ui/modules_details/brainmask.py
dtiplayground/ui/modules_details/braintractography.py
dtiplayground/ui/modules_details/dtiestimate.py
dtiplayground/ui/modules_details/dtiregister.py
dtiplayground/ui/modules_details/eddymotion.py
dtiplayground/ui/modules_details/exclude.py
dtiplayground/ui/modules_details/interlacecheck.py
dtiplayground/ui/modules_details/nomodule.py
dtiplayground/ui/modules_details/qcreport.py
dtiplayground/ui/modules_details/singletract.py
dtiplayground/ui/modules_details/slicecheck.py
dtiplayground/ui/modules_details/susceptibility.py
dtiplayground/ui/modules_details/utilheader.py
dtiplayground/ui/modules_details/utilmerge.py