LICENSE
README.md
setup.cfg
setup.py
./dtiplayground/__init__.py
./dtiplayground/config.py
./dtiplayground/dmri/__init__.py
./dtiplayground/dmri/atlasbuilder/__init__.py
./dtiplayground/dmri/atlasbuilder/atlasbuilder.py
./dtiplayground/dmri/atlasbuilder/utils.py
./dtiplayground/dmri/autotract/__init__.py
./dtiplayground/dmri/common/__init__.py
./dtiplayground/dmri/common/cli_wrappers.py
./dtiplayground/dmri/common/data/__init__.py
./dtiplayground/dmri/common/data/fsl_regb02b0.cnf
./dtiplayground/dmri/common/data/software_paths.yml
./dtiplayground/dmri/common/study/__init__.py
./dtiplayground/dmri/common/study/loaders.py
./dtiplayground/dmri/common/tools/__init__.py
./dtiplayground/dmri/common/tools/base.py
./dtiplayground/dmri/common/tools/brainsfit.py
./dtiplayground/dmri/common/tools/crop_dti.py
./dtiplayground/dmri/common/tools/dti_reg.py
./dtiplayground/dmri/common/tools/dtiaverage.py
./dtiplayground/dmri/common/tools/dtiestim.py
./dtiplayground/dmri/common/tools/dtiprocess.py
./dtiplayground/dmri/common/tools/fsl.py
./dtiplayground/dmri/common/tools/greedy_atlas.py
./dtiplayground/dmri/common/tools/image_math.py
./dtiplayground/dmri/common/tools/itk_transform_tools.py
./dtiplayground/dmri/common/tools/resample_dti_log_euclidean.py
./dtiplayground/dmri/common/tools/unu.py
./dtiplayground/dmri/fiberanalyzer/__init__.py
./dtiplayground/dmri/preprocessing/__init__.py
./dtiplayground/dmri/preprocessing/dwi.py
./dtiplayground/dmri/preprocessing/protocols.py
./dtiplayground/dmri/preprocessing/modules/__init__.py
./dtiplayground/dmri/preprocessing/modules/BASELINE_Average/BASELINE_Average.py
./dtiplayground/dmri/preprocessing/modules/BASELINE_Average/BASELINE_Average.yml
./dtiplayground/dmri/preprocessing/modules/BASELINE_Average/__init__.py
./dtiplayground/dmri/preprocessing/modules/BASELINE_Average/computations.py
./dtiplayground/dmri/preprocessing/modules/BRAIN_Mask/BRAIN_Mask.py
./dtiplayground/dmri/preprocessing/modules/BRAIN_Mask/BRAIN_Mask.yml
./dtiplayground/dmri/preprocessing/modules/BRAIN_Mask/__init__.py
./dtiplayground/dmri/preprocessing/modules/DTI_Estimate/DTI_Estimate.py
./dtiplayground/dmri/preprocessing/modules/DTI_Estimate/DTI_Estimate.yml
./dtiplayground/dmri/preprocessing/modules/DTI_Estimate/__init__.py
./dtiplayground/dmri/preprocessing/modules/DTI_Register/DTI_Register.py
./dtiplayground/dmri/preprocessing/modules/DTI_Register/DTI_Register.yml
./dtiplayground/dmri/preprocessing/modules/DTI_Register/__init__.py
./dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/EDDYMOTION_Correct.py
./dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/EDDYMOTION_Correct.yml
./dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/__init__.py
./dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct/utils.py
./dtiplayground/dmri/preprocessing/modules/INTERLACE_Check/INTERLACE_Check.py
./dtiplayground/dmri/preprocessing/modules/INTERLACE_Check/INTERLACE_Check.yml
./dtiplayground/dmri/preprocessing/modules/INTERLACE_Check/__init__.py
./dtiplayground/dmri/preprocessing/modules/INTERLACE_Check/computations.py
./dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/MANUAL_Exclude.py
./dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/MANUAL_Exclude.yml
./dtiplayground/dmri/preprocessing/modules/MANUAL_Exclude/__init__.py
./dtiplayground/dmri/preprocessing/modules/QC_Report/QC_Report.py
./dtiplayground/dmri/preprocessing/modules/QC_Report/QC_Report.yml
./dtiplayground/dmri/preprocessing/modules/QC_Report/__init__.py
./dtiplayground/dmri/preprocessing/modules/SLICE_Check/SLICE_Check.py
./dtiplayground/dmri/preprocessing/modules/SLICE_Check/SLICE_Check.yml
./dtiplayground/dmri/preprocessing/modules/SLICE_Check/__init__.py
./dtiplayground/dmri/preprocessing/modules/SLICE_Check/computations.py
./dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/SUSCEPTIBILITY_Correct.py
./dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/SUSCEPTIBILITY_Correct.yml
./dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/__init__.py
./dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct/utils.py
./dtiplayground/dmri/preprocessing/modules/TEST/TEST.py
./dtiplayground/dmri/preprocessing/modules/TEST/TEST.yml
./dtiplayground/dmri/preprocessing/modules/TEST/__init__.py
./dtiplayground/dmri/preprocessing/modules/UTIL_Header/UTIL_Header.py
./dtiplayground/dmri/preprocessing/modules/UTIL_Header/UTIL_Header.yml
./dtiplayground/dmri/preprocessing/modules/UTIL_Header/__init__.py
./dtiplayground/dmri/preprocessing/modules/UTIL_Merge/UTIL_Merge.py
./dtiplayground/dmri/preprocessing/modules/UTIL_Merge/UTIL_Merge.yml
./dtiplayground/dmri/preprocessing/modules/UTIL_Merge/__init__.py
./dtiplayground/dmri/preprocessing/templates/__init__.py
./dtiplayground/dmri/preprocessing/templates/module_template.py
./dtiplayground/dmri/preprocessing/templates/module_template.yml
./dtiplayground/dmri/preprocessing/templates/protocol_template.yml
./dtiplayground/ui/__init__.py
./dtiplayground/ui/dmriprepUI.py
./dtiplayground/ui/dmriprepwindow.py
./dtiplayground/ui/executiontab.py
./dtiplayground/ui/general_tab.py
./dtiplayground/ui/loadingbutton.py
./dtiplayground/ui/module_selector_tab.py
./dtiplayground/ui/modules_details_communicate.py
./dtiplayground/ui/modules_details_tab.py
./dtiplayground/ui/protocol.py
./dtiplayground/ui/protocoltab.py
./dtiplayground/ui/quickview.py
./dtiplayground/ui/softwarepaths.py
./dtiplayground/ui/data/__init__.py
./dtiplayground/ui/data/init_protocol.yml
./dtiplayground/ui/modules_details/__init__.py
./dtiplayground/ui/modules_details/baselineaverage.py
./dtiplayground/ui/modules_details/brainmask.py
./dtiplayground/ui/modules_details/dtiestimate.py
./dtiplayground/ui/modules_details/eddymotion.py
./dtiplayground/ui/modules_details/exclude.py
./dtiplayground/ui/modules_details/interlacecheck.py
./dtiplayground/ui/modules_details/nomodule.py
./dtiplayground/ui/modules_details/qcreport.py
./dtiplayground/ui/modules_details/slicecheck.py
./dtiplayground/ui/modules_details/susceptibility.py
./dtiplayground/ui/modules_details/utilheader.py
./dtiplayground/ui/modules_details/utilmerge.py
bin/__pycache__
bin/dmriprep
bin/dmriprep-ui
bin/dmriprep-ui.py
bin/dmriprep.py
bin/dmriprep_ui
bin/dpg.py
bin/dtiatlasbuilder.py
bin/fslinstaller.py
docs/h-build.yml
docs/lists.yml
docs/sample_input.yml
docs/sample_study_minesota.yml
docs/sample_study_output.yml
docs/sample_study_unc.yml
docs/study.yml
dtiplayground.egg-info/PKG-INFO
dtiplayground.egg-info/SOURCES.txt
dtiplayground.egg-info/dependency_links.txt
dtiplayground.egg-info/requires.txt
dtiplayground.egg-info/top_level.txt
dtiplayground/dmri/common/data/fsl_regb02b0.cnf
dtiplayground/dmri/common/data/software_paths.yml
dtiplayground/dmri/preprocessing/templates/protocol_template.yml