biopython>=1.78
numpy>=1.19
pandas>=1.1
ViennaRNA>=2.4
psutil>=5.8
tqdm>=4.0

[dev]
pytest>=6.0
pytest-cov>=2.0
black>=22.0
flake8>=4.0
mypy>=0.900

[mpi]
mpi4py>=3.0
parasail>=1.2

[scoring]
ydf>=0.9.0
scikit-learn>=1.0
