.gitignore
LICENSE
MANIFEST.in
README.md
pyproject.toml
pytest.ini
.github/python-version.txt
.github/workflows/static.yml
examples/generate_dataset.py
examples/run_prediction.py
examples/run_training.py
examples/output/ae_checkpoint.h5
examples/output/ae_learning.png
examples/output/dataset.pickle
examples/output/han_checkpoint.h5
examples/output/han_learning.png
sample_data/swc/17300_6010_x23413_y13446.swc
sample_data/swc/17302_00001.swc
sample_data/swc/17302_00057.swc
sample_data/swc/17302_00112.swc
sample_data/swc/17545_00093.swc
sample_data/swc/17545_00094.swc
sample_data/swc/17545_00095.swc
sample_data/swc/17545_00166.swc
sample_data/swc/17545_00168.swc
sample_data/swc/17545_00169.swc
src/DSM_tools.egg-info/PKG-INFO
src/DSM_tools.egg-info/SOURCES.txt
src/DSM_tools.egg-info/dependency_links.txt
src/DSM_tools.egg-info/requires.txt
src/DSM_tools.egg-info/top_level.txt
src/dsmtools/__init__.py
src/dsmtools/title_page.md
src/dsmtools/modeling/AE.py
src/dsmtools/modeling/AE_1282_SEU.h5
src/dsmtools/modeling/HAN.py
src/dsmtools/modeling/HAN_1282_SEU.h5
src/dsmtools/modeling/__init__.py
src/dsmtools/modeling/data_prep.py
src/dsmtools/modeling/model_abstract.py
src/dsmtools/modeling/modeling_guide.md
src/dsmtools/modeling/w2v_model_6dim_from_1200_seu.model
src/dsmtools/preprocessing/__init__.py
src/dsmtools/preprocessing/neuron_tree.py
src/dsmtools/preprocessing/preprocessing_guide.md
src/dsmtools/preprocessing/sequencing.py
src/dsmtools/preprocessing/swc_qc.py
src/dsmtools/utils/__init__.py
src/dsmtools/utils/misc.py
src/dsmtools/utils/swc.py
src/dsmtools/utils/ccf_atlas/__init__.py
src/dsmtools/utils/ccf_atlas/_annotation.py
src/dsmtools/utils/ccf_atlas/_image.py
src/dsmtools/utils/ccf_atlas/annotation_25.nrrd
src/dsmtools/utils/ccf_atlas/bs_level.csv
src/dsmtools/utils/ccf_atlas/dict_to_selected.json
tests/test_swc_related.py
tests/tree_related.py