Metadata-Version: 2.1
Name: DSGRN
Version: 1.2.0
Summary: DSGRN (Dynamic Signatures Generated by Regulatory Networks)
Home-page: https://github.com/marciogameiro/DSGRN
Author: Marcio Gameiro
Author-email: marciogameiro@gmail.com
License: UNKNOWN
Description: # DSGRN
        Dynamic Signatures Generated by Regulatory Networks
        
        [![Build Status](https://travis-ci.org/shaunharker/DSGRN.svg?branch=master)](https://travis-ci.org/shaunharker/DSGRN) [![Coverage Status](https://coveralls.io/repos/github/shaunharker/DSGRN/badge.svg?branch=master)](https://coveralls.io/github/shaunharker/DSGRN?branch=master)[![DOI](https://zenodo.org/badge/35697682.svg)](https://zenodo.org/badge/latestdoi/35697682)
        
        [Documentation](http://dsgrn.readthedocs.io/en/latest/)
        
        ## Overview 
        
        This project uses computational dynamics to produce
        dynamical surveys of switching models of regulatory 
        networks. The resulting data is stored into a database
        which can then be queried for further research.
        
        
        ## Installation
        
        To get the latest tagged version from the PyPI repository:
        
        ```bash
        pip install DSGRN
        ```
        
        To uninstall:
        
        ```bash
        pip uninstall DSGRN
        ```
        
        ## Installing from source
        
        Assuming you have a C++ compiler and the Python 3 dependencies installed on your system, you can install from source with the command:
        
        	pip install --upgrade --force-reinstall --no-deps --no-cache-dir git+https://github.com/marciogameiro/DSGRN.git
        
        Alternatively, you can clone the GitHub repository and install with:
        
        	git clone https://github.com/marciogameiro/DSGRN.git
        	cd DSGRN
        	./install.sh
        
        If you don't have all the dependencies installed or if the above fails, see [Install.md](Install.md) for some options on how to proceed. Installing DSGRN as above on a Mac usually fails with the C++ compiler and the Python provided by Apple. In that case you need to install new versions as described in the link above.
        
        ## Usage
        
        To check if DSGRN is installed do
        
        ```python,test
        import DSGRN
        
        network = DSGRN.Network("X1 : (~X1)(X2)\n X2 : (X1)(~X2)")
        DSGRN.DrawGraph(network)
        ```
        
        This should plot the network
        
        <img src="network.png" width="120">
        
        See the [GettingStarted.ipynb](https://github.com/marciogameiro/DSGRN/blob/master/Tutorials/GettingStarted.ipynb) jupyter notebook in the [Tutorials](https://github.com/marciogameiro/DSGRN/blob/master/Tutorials/) folder for the basic usage of DSGRN.
        
        ## Examples and Documentation
        
        See [Tutorials](https://github.com/marciogameiro/DSGRN/blob/master/Tutorials/) folder for examples.
        
        Also see the [documentation](https://shaunharker.github.io/DSGRN/).
        
Platform: UNKNOWN
Description-Content-Type: text/markdown
Provides-Extra: MPI
