LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
dreem/__init__.py
dreem/env.yml
dreem/main.py
dreem/requirements.txt
dreem.egg-info/PKG-INFO
dreem.egg-info/SOURCES.txt
dreem.egg-info/dependency_links.txt
dreem.egg-info/entry_points.txt
dreem.egg-info/requires.txt
dreem.egg-info/top_level.txt
dreem/aggregate/__init__.py
dreem/aggregate/library.py
dreem/aggregate/library_samples.py
dreem/aggregate/main.py
dreem/aggregate/mutation_count.py
dreem/align/__init__.py
dreem/align/fq2bam.py
dreem/align/fqs.py
dreem/align/main.py
dreem/align/xams.py
dreem/cluster/EMclustering.py
dreem/cluster/__init__.py
dreem/cluster/bitvector.py
dreem/cluster/clusteringAnalysis.py
dreem/cluster/main.py
dreem/demultiplex/__init__.py
dreem/demultiplex/demultiplex.py
dreem/demultiplex/main.py
dreem/draw/__init__.py
dreem/draw/load_dataset.py
dreem/draw/main.py
dreem/draw/manipulator.py
dreem/draw/plotter.py
dreem/draw/study.py
dreem/draw/util.py
dreem/draw/resources/my_dataset.feather
dreem/resources/__init__.py
dreem/resources/get_attributes.py
dreem/util/__init__.py
dreem/util/artxt.py
dreem/util/cli.py
dreem/util/dependencies.py
dreem/util/dms.py
dreem/util/docdef.py
dreem/util/docstring.py
dreem/util/dump.py
dreem/util/files_sanity.py
dreem/util/logs.py
dreem/util/parallel.py
dreem/util/path.py
dreem/util/rnastructure.py
dreem/util/seq.py
dreem/util/shell.py
dreem/util/util.py
dreem/vector/__init__.py
dreem/vector/main.py
dreem/vector/profile.py
dreem/vector/samread.py
dreem/vector/vector.py
test/test_demultiplexing.py
test/test_pipeline.py