.bumpversion.cfg
.cookiecutterrc
.coveragerc
.editorconfig
.travis.yml
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.md
README.rst
appveyor.yml
setup.cfg
setup.py
tox.ini
ci/appveyor-bootstrap.py
ci/appveyor-download.py
ci/appveyor-with-compiler.cmd
ci/bootstrap.py
ci/templates/.travis.yml
ci/templates/appveyor.yml
docs/Makefile
docs/conf.py
docs/dohlee.gene.rst
docs/dohlee.hg38.rst
docs/dohlee.plot.rst
docs/dohlee.rst
docs/dohlee.thread.rst
docs/index.rst
docs/make.bat
docs/requirements.txt
docs/reference/Makefile
docs/reference/conf.py
docs/reference/make.bat
src/dohlee/__init__.py
src/dohlee/__main__.py
src/dohlee/analysis.py
src/dohlee/bed.py
src/dohlee/cli.py
src/dohlee/gene.py
src/dohlee/genome.py
src/dohlee/hg38.py
src/dohlee/plot.py
src/dohlee/thread.py
src/dohlee/util.py
src/dohlee/variant.py
src/dohlee.egg-info/PKG-INFO
src/dohlee.egg-info/SOURCES.txt
src/dohlee.egg-info/dependency_links.txt
src/dohlee.egg-info/entry_points.txt
src/dohlee.egg-info/requires.txt
src/dohlee.egg-info/top_level.txt
src/dohlee.egg-info/zip-safe
src/dohlee/fonts/FreeSans.ttf
src/dohlee/fonts/__init__.py
src/dohlee/genomeviz/__init__.py
src/dohlee/genomeviz/core.py
src/dohlee/genomeviz/util.py
src/dohlee/seq/__init__.py
src/dohlee/seq/rrbs.py
tests/bed_tests.py
tests/dohlee_tests.py
tests/gene_tests.py
tests/hg38_tests.py
tests/plot_tests.py
tests/thread_tests.py
tests/util_tests.py
tests/baseline_images/pca.png
tests/data/test.bed