running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
... checking existence of https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D.html ...
    found!
figure file https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D:
    can use https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D.html for format html
... checking existence of https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D.png ...
    found!
... checking existence of https://raw.github.com/hplgit/doconce/master/test/bokeh_test.html ...
    found!
figure file https://raw.github.com/hplgit/doconce/master/test/bokeh_test:
    can use https://raw.github.com/hplgit/doconce/master/test/bokeh_test.html for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=latex -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
transforming sections: subsection to subsubsection...
transforming sections: section to subsection...
transforming sections: chapter to section...
found info about 11 exercises
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
found ../doc/src/manual/fig/wave1D.png
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).


exporting publish database papers.pub to papers.bib:
*** made directory latex_figs for admon figures
output in testdoc.p.tex
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: found link tag "...": "..." in footnote, which was removed
    from tooltip (since it does not work with bootstrap tooltips)
URL: "google.com" is perhaps the most famous web site today.
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: TITLE may look strange with a template -
             it is recommended to comment out the title: #TITLE:

*** warning: AUTHOR may look strange with a template -
 it is recommended to comment out all authors: #AUTHOR.
 Usually better to hardcode authors in a footer in the template.
output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
figure file bokeh_test:
    can use bokeh_test.html for format html
*** warning: --pygm_style=emacs is not recommended when --html_style=solarized
    automatically changed to --html_style=perldoc
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: --pygm_style=emacs is not recommended when --html_style=solarized
    automatically changed to --html_style=perldoc
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in demo_testdoc.html
running preprocess -DFORMAT=latex -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

found ../doc/src/manual/fig/wave1D.png
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).


exporting publish database papers.pub to papers.bib:
output in testdoc.p.tex
running preprocess -DFORMAT=pdflatex -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pdflatex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.pdf for format pdflatex
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!

exporting publish database papers.pub to papers.bib:
output in testdoc.tex
running preprocess -DFORMAT=pdflatex -DDEVICE=paper  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pdflatex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.pdf for format pdflatex
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!

exporting publish database papers.pub to papers.bib:
*** warning: --latex_double_hyphen may lead to unwanted edits.
             search for all -- in the .p.tex file and check.
output in testdoc.p.tex
running preprocess -DFORMAT=plain -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to plain

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
standalone exercises in testdoc_exercises.zip
found info about 11 exercises
output in testdoc.txt
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
... fetching source code from https://raw.githubusercontent.com/hplgit/doconce/master/test
copying from regex "subroutine" until end of file
     file: https://raw.githubusercontent.com/hplgit/doconce/master/test/../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
... fetching source code from https://raw.githubusercontent.com/hplgit/doconce/master/test
copying after regex "a comment" until "^C\s+END1"
     file: https://raw.githubusercontent.com/hplgit/doconce/master/test/../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
... fetching source code from https://raw.githubusercontent.com/hplgit/doconce/master/test
copy complete file https://raw.githubusercontent.com/hplgit/doconce/master/test/../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc_code_prefix.html
running preprocess -DFORMAT=plain -DDEVICE=screen -DSOMEVAR="1" testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'plain', 'DEVICE': 'screen', 'SOMEVAR': '1'}
Translating doconce text in tmp_mako__testdoc.do.txt to plain

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
output in testdoc.txt
running preprocess -DFORMAT=st -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to st

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
*** warning: footnotes are not supported for format st
    footnotes will be left in the doconce syntax
*** warning: table headline with entries
    | S | command |
   has 2 columns while further down there are 3 columns
   the list of columns in the headline reads
['S', 'command']
   Here is the entire table:
[['horizontal rule'], ['S', 'command'], ['horizontal rule'], ['$ ||a_0|| $', "'norm", "length'"], ['x\\cap y', "'x", "y'"], ['horizontal rule']]
output in testdoc.st
running preprocess -DFORMAT=sphinx -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to sphinx

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** error: heading "=== Here is a list with subsubsection heading ===" is subsubsection and
    comes after section, but will be treated as subsection in sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0080.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0080.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0090.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0090.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0100.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0100.png for sphinx
*** warning: hyperlink to URL testdoc.do.txt is to a local file,
    recommended to be _static/testdoc.do.txt for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0085.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0085.png for sphinx
*** warning: hyperlink to URL google.com is to a local file,
    recommended to be _static/google.com for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0105.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0105.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0095.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0095.png for sphinx
    move linked file to _static and change URLs unless
    you really know that the links will be correct when the
    sphinx build directory is moved to its final destination
*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format sphinx
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: new !split inserted (override all existing !split)
    before every ======= heading =======
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
*** warning: sphinx/rst is a suboptimal format for
    typesetting edit markup such as
    [hpl 3: laptops and mobile units -> computers, tablets,
and phones]
    Use HTML or LaTeX output instead, implement the
    edits (doconce apply_edit_comments) and then use sphinx.

*** warning: pyscpro for computer code (sage cells) is requested, but'
    icsecontrib.sagecellserver from https://github.com/kriskda/sphinx-sagecell
    is not installed. Using plain Python typesetting instead.
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: ``exp(-x)``, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

.. math::
         y(x) = e^{-y}.

output in testdoc.rst
running preprocess -DFORMAT=rst -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to rst

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** error: heading "=== Here is a list with subsubsection heading ===" is subsubsection and
    comes after section, but will be treated as subsection in rst
*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format rst
output in testdoc.rst
running preprocess -DFORMAT=epytext -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to epytext

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
*** warning: footnotes are not supported for format epytext
    footnotes will be left in the doconce syntax
output in testdoc.epytext
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pandoc

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.

output in testdoc.md
running preprocess -DFORMAT=mwiki -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to mwiki

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format mwiki
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if df_plot.png is stored at en.wikipedia.org/w/api.php...
 ...found Df plot.png at wikimedia
 ...checking if df2s8765s_plot.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file df2s8765s_plot.png to
    common.wikimedia.org
 ...for now we use local file Df2s8765s plot.png
*** warning: footnotes are not supported for format mwiki
    footnotes will be left in the doconce syntax
*** warning: reference to label "mymatrix:eq1" in an equation does not work in MediaWiki
*** warning: reference to label "mymatrix:eq2" in an equation does not work in MediaWiki
*** warning: reference to label "my:eq1" in an equation does not work in MediaWiki
*** warning: reference to label "circle:x" in an equation does not work in MediaWiki
*** warning: reference to label "circle:y" in an equation does not work in MediaWiki
output in testdoc.mwiki
running preprocess -DFORMAT=cwiki -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to cwiki

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format cwiki
*** warning: footnotes are not supported for format cwiki
    footnotes will be left in the doconce syntax
*** warning: table headline with entries
    |  |  |  |
   has 3 columns while further down there are 5 columns
   the list of columns in the headline reads
['', '', '']
   Here is the entire table:
[['horizontal rule'], ['', '', ''], ['horizontal rule'], ['{{{\\mathcal{L}=0}}}', '[[../doc/src/manual/mov/wave_frames/frame_0080.png', '{{{080}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0085.png', '{{{085}}}]]'], ['{{{a=b}}}', '[[../doc/src/manual/mov/wave_frames/frame_0090.png', '{{{090}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0095.png', '{{{095}}}]]'], ['{{{\\nabla\\cdot\\bm{u} =0 }}}', '[[../doc/src/manual/mov/wave_frames/frame_0100.png', '{{{100}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0105.png', '{{{105}}}]]'], ['horizontal rule']]
output in testdoc.cwiki
running preprocess -DFORMAT=ipynb -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to ipynb

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
Failed to remove ans_at_end environment
Failed to remove sol_at_end environment
output in testdoc.ipynb
running preprocess -DFORMAT=matlabnb -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to matlabnb

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format matlabnb
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align*}-\end{align*} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
output in testdoc.m
running preprocess -DFORMAT=gwiki -DDEVICE=screen -DMYVAR1="3" -DMYVAR2="a string" testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'gwiki', 'DEVICE': 'screen', 'MYVAR1': 3, 'MYVAR2': 'a string'}
Translating doconce text in tmp_mako__testdoc.do.txt to gwiki

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format gwiki

NOTE: Place ../doc/src/manual/fig/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place ../doc/src/manual/fig/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place ../doc/src/manual/fig/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL

*** warning: footnotes are not supported for format gwiki
    footnotes will be left in the doconce syntax
output in testdoc.gwiki
running preprocess -DFORMAT=latex -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

found ../doc/src/manual/fig/wave1D.png
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!

exporting publish database papers.pub to papers.bib:
output in testdoc.p.tex
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pandoc

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.

output in testdoc.md
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'pandoc', 'DEVICE': 'screen', 'testdoc': ''}
*** warning : Removing heading with title. Consider to place it in _config.yml
*** warning : Removing heading with author. Consider to place it in _config.yml
*** warning : Removing heading with date. Consider to place it in _config.yml
*** warning : Removing the toc tag
*** warning: footnotes are not supported for format html
    footnotes will be left in the doconce syntax
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives
*** warning : skipped a separator, which appeared to be inside the !bc and !ec directives

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.


*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
... checking existence of https://raw.github.com/hplgit/doconce/master/test/bokeh_test.html ...
    found!
figure file https://raw.github.com/hplgit/doconce/master/test/bokeh_test:
    can use https://raw.github.com/hplgit/doconce/master/test/bokeh_test.html for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
... checking existence of https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D.html ...
    found!
figure file https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D:
    can use https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D.html for format html
... checking existence of https://raw.github.com/hplgit/doconce/master/test/../doc/src/manual/fig/wave1D.png ...
    found!
output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'html', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file bokeh_test:
    can use bokeh_test.html for format html
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=latex -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
transforming sections: subsection to subsubsection...
transforming sections: section to subsection...
transforming sections: chapter to section...
found info about 11 exercises
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

found ../doc/src/manual/fig/wave1D.png
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!

exporting publish database papers.pub to papers.bib:
*** made directory latex_figs for admon figures
output in testdoc.p.tex
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
figure file bokeh_test:
    can use bokeh_test.html for format html
*** warning: found link tag "...": "..." in footnote, which was removed
    from tooltip (since it does not work with bootstrap tooltips)
URL: "google.com" is perhaps the most famous web site today.
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: TITLE may look strange with a template -
             it is recommended to comment out the title: #TITLE:

*** warning: AUTHOR may look strange with a template -
 it is recommended to comment out all authors: #AUTHOR.
 Usually better to hardcode authors in a footer in the template.
output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: --pygm_style=emacs is not recommended when --html_style=solarized
    automatically changed to --html_style=perldoc
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc.html
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: --pygm_style=emacs is not recommended when --html_style=solarized
    automatically changed to --html_style=perldoc
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in demo_testdoc.html
running preprocess -DFORMAT=latex -DDEVICE=screen -DSOMEVAR testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'latex', 'DEVICE': 'screen', 'SOMEVAR': True}
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
found ../doc/src/manual/fig/wave1D.png
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).


exporting publish database papers.pub to papers.bib:
output in testdoc.p.tex
running preprocess -DFORMAT=pdflatex -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pdflatex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.pdf for format pdflatex
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!

exporting publish database papers.pub to papers.bib:
output in testdoc.tex
running preprocess -DFORMAT=pdflatex -DDEVICE=paper  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pdflatex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.pdf for format pdflatex

exporting publish database papers.pub to papers.bib:
*** warning: --latex_double_hyphen may lead to unwanted edits.
             search for all -- in the .p.tex file and check.
output in testdoc.p.tex
running preprocess -DFORMAT=plain -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to plain

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
standalone exercises in testdoc_exercises.zip
found info about 11 exercises
output in testdoc.txt
running preprocess -DFORMAT=html -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to html

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
... fetching source code from https://raw.githubusercontent.com/hplgit/doconce/master/test
copying from regex "subroutine" until end of file
     file: https://raw.githubusercontent.com/hplgit/doconce/master/test/../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
... fetching source code from https://raw.githubusercontent.com/hplgit/doconce/master/test
copying after regex "a comment" until "^C\s+END1"
     file: https://raw.githubusercontent.com/hplgit/doconce/master/test/../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
... fetching source code from https://raw.githubusercontent.com/hplgit/doconce/master/test
copy complete file https://raw.githubusercontent.com/hplgit/doconce/master/test/../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file bokeh_test:
    can use bokeh_test.html for format html
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format html
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: inline math in HTML must have space around <:
    <1/2  ->  < 1/2
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: <code>exp(-x)</code>, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

<p></p>
$$ y(x) = e^{-y}.$$

output in testdoc_code_prefix.html
running preprocess -DFORMAT=plain -DDEVICE=screen -DSOMEVAR="1" testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'plain', 'DEVICE': 'screen', 'SOMEVAR': '1'}
Translating doconce text in tmp_mako__testdoc.do.txt to plain

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
output in testdoc.txt
running preprocess -DFORMAT=st -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to st

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
*** warning: footnotes are not supported for format st
    footnotes will be left in the doconce syntax
*** warning: table headline with entries
    | S | command |
   has 2 columns while further down there are 3 columns
   the list of columns in the headline reads
['S', 'command']
   Here is the entire table:
[['horizontal rule'], ['S', 'command'], ['horizontal rule'], ['$ ||a_0|| $', "'norm", "length'"], ['x\\cap y', "'x", "y'"], ['horizontal rule']]
output in testdoc.st
running preprocess -DFORMAT=sphinx -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to sphinx

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** error: heading "=== Here is a list with subsubsection heading ===" is subsubsection and
    comes after section, but will be treated as subsection in sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0095.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0095.png for sphinx
*** warning: hyperlink to URL testdoc.do.txt is to a local file,
    recommended to be _static/testdoc.do.txt for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0090.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0090.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0100.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0100.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0085.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0085.png for sphinx
*** warning: hyperlink to URL google.com is to a local file,
    recommended to be _static/google.com for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0080.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0080.png for sphinx
*** warning: hyperlink to URL ../doc/src/manual/mov/wave_frames/frame_0105.png is to a local file,
    recommended to be _static/../doc/src/manual/mov/wave_frames/frame_0105.png for sphinx
    move linked file to _static and change URLs unless
    you really know that the links will be correct when the
    sphinx build directory is moved to its final destination
*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format sphinx
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
... checking existence of https://openclipart.org/people/jpneok/junebug.svg ...
    found!
*** warning: new !split inserted (override all existing !split)
    before every ======= heading =======
    because this strategy gives a well-functioning
    table of contents in Sphinx
    (use --sphinx_keep_splits to enforce your own !split commands)
*** warning: sphinx/rst is a suboptimal format for
    typesetting edit markup such as
    [hpl 3: laptops and mobile units -> computers, tablets,
and phones]
    Use HTML or LaTeX output instead, implement the
    edits (doconce apply_edit_comments) and then use sphinx.

*** warning: pyscpro for computer code (sage cells) is requested, but'
    icsecontrib.sagecellserver from https://github.com/kriskda/sphinx-sagecell
    is not installed. Using plain Python typesetting instead.
*** warning: quiz explanation contains block (fig/code/math)
    and is therefore skipped
Ooops, forgot a minus: ``exp(-x)``, otherwise this Python code
must be considered as a good answer. It is more natural,
though, to write the solution to the problem
in mathematical notation:

.. math::
         y(x) = e^{-y}.

output in testdoc.rst
running preprocess -DFORMAT=rst -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to rst

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** error: heading "=== Here is a list with subsubsection heading ===" is subsubsection and
    comes after section, but will be treated as subsection in rst
*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format rst
output in testdoc.rst
running preprocess -DFORMAT=epytext -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to epytext

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
*** warning: footnotes are not supported for format epytext
    footnotes will be left in the doconce syntax
output in testdoc.epytext
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pandoc

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.

output in testdoc.md
running preprocess -DFORMAT=mwiki -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to mwiki

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format mwiki
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if wave1D.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file wave1D.png to
    common.wikimedia.org
 ...for now we use local file Wave1D.png
 ...checking if df_plot.png is stored at en.wikipedia.org/w/api.php...
 ...found Df plot.png at wikimedia
 ...checking if df2s8765s_plot.png is stored at en.wikipedia.org/w/api.php...
 ...for wikipedia/wikibooks you must upload image file df2s8765s_plot.png to
    common.wikimedia.org
 ...for now we use local file Df2s8765s plot.png
*** warning: footnotes are not supported for format mwiki
    footnotes will be left in the doconce syntax
*** warning: reference to label "mymatrix:eq1" in an equation does not work in MediaWiki
*** warning: reference to label "mymatrix:eq2" in an equation does not work in MediaWiki
*** warning: reference to label "my:eq1" in an equation does not work in MediaWiki
*** warning: reference to label "circle:x" in an equation does not work in MediaWiki
*** warning: reference to label "circle:y" in an equation does not work in MediaWiki
output in testdoc.mwiki
running preprocess -DFORMAT=cwiki -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to cwiki

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format cwiki
*** warning: footnotes are not supported for format cwiki
    footnotes will be left in the doconce syntax
*** warning: table headline with entries
    |  |  |  |
   has 3 columns while further down there are 5 columns
   the list of columns in the headline reads
['', '', '']
   Here is the entire table:
[['horizontal rule'], ['', '', ''], ['horizontal rule'], ['{{{\\mathcal{L}=0}}}', '[[../doc/src/manual/mov/wave_frames/frame_0080.png', '{{{080}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0085.png', '{{{085}}}]]'], ['{{{a=b}}}', '[[../doc/src/manual/mov/wave_frames/frame_0090.png', '{{{090}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0095.png', '{{{095}}}]]'], ['{{{\\nabla\\cdot\\bm{u} =0 }}}', '[[../doc/src/manual/mov/wave_frames/frame_0100.png', '{{{100}}}]]', '[[../doc/src/manual/mov/wave_frames/frame_0105.png', '{{{105}}}]]'], ['horizontal rule']]
output in testdoc.cwiki
running preprocess -DFORMAT=ipynb -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to ipynb

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format ipynb
*** warning: footnotes are not supported for format ipynb
    footnotes will be left in the doconce syntax
collected all required additional files in ipynb-testdoc-src.tar.gz which must be distributed with the notebook
Failed to remove ans_at_end environment
Failed to remove sol_at_end environment
output in testdoc.ipynb
running preprocess -DFORMAT=matlabnb -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to matlabnb

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format matlabnb
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
*** warning: \begin{align*}-\end{align*} does not work in Matlab notebooks
*** warning: \begin{align}-\end{align} does not work in Matlab notebooks
output in testdoc.m
running preprocess -DFORMAT=gwiki -DDEVICE=screen -DMYVAR1="3" -DMYVAR2="a string" testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
mako variables: {'FORMAT': 'gwiki', 'DEVICE': 'screen', 'MYVAR1': 3, 'MYVAR2': 'a string'}
Translating doconce text in tmp_mako__testdoc.do.txt to gwiki

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format gwiki
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!

NOTE: Place ../doc/src/manual/fig/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place ../doc/src/manual/fig/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place ../doc/src/manual/fig/wave1D.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL


NOTE: Place https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png at some place on the web and edit the
      .gwiki page, either manually (seach for 'Figure: ')
      or use the doconce script:
      doconce gwiki_figsubst.py mydoc.gwiki URL

*** warning: footnotes are not supported for format gwiki
    footnotes will be left in the doconce syntax
output in testdoc.gwiki
running preprocess -DFORMAT=latex -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to latex

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
found info about 11 exercises
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).

... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
found ../doc/src/manual/fig/wave1D.png
figure ../doc/src/manual/fig/wave1D.png must have extension(s) .eps, .ps
*** warning: need to convert from ../doc/src/manual/fig/wave1D.png to ../doc/src/manual/fig/wave1D.eps
using ImageMagick's convert program, but the result will
be loss of quality. Generate a proper ../doc/src/manual/fig/wave1D.eps file (if possible).


exporting publish database papers.pub to papers.bib:
output in testdoc.p.tex
running preprocess -DFORMAT=pandoc -DDEVICE=screen  testdoc.do.txt > tmp_preprocess__testdoc.do.txt
running mako on tmp_preprocess__testdoc.do.txt to make tmp_mako__testdoc.do.txt
Translating doconce text in tmp_mako__testdoc.do.txt to pandoc

*** warning: found multi-line caption for ../doc/src/manual/fig/wave1D.png

 A long
caption spanning
several lines and containing verbatim words like `my_file_v1` and `my_file_v2`
as well as math with subscript as in $t_{i+1}$. label{myfig}

    fix: collected this text to one single line (right?)

*** warning: the total of 1 fixes above should be manually edited in the file!
    (also note: some of these automatic fixes may not be what you want)

*** running OS command python -c 'print("Testing\noutput\nfrom\nPython.")'
-------- terminal output ----------
Testing
output
from
Python.
-----------------------------------
copying from regex "subroutine" until end of file
     file: ../doc/src/manual/__testcode.f,lines 3-16 (format: fcod)
copying after regex "a comment" until "^C\s+END1"
     file: ../doc/src/manual/__testcode.f,lines 2-11 (format: fcod)
copy complete file ../doc/src/manual/__testcode.f (format: ccq)
*** replacing \bm{...} by \boldsymbol{...} (\bm is not supported by MathJax)
found info about 11 exercises
figure file ../doc/src/manual/fig/wave1D:
    can use ../doc/src/manual/fig/wave1D.png for format pandoc
... checking existence of https://raw.github.com/doconce/doconce/master/doc/src/blog/f_plot.png ...
    found!
*** warning: footnotes are not supported for format pandoc
    footnotes will be left in the doconce syntax
*** warning: latex envir \begin{alignat} does not work well.

output in testdoc.md
