LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
DNBC4tools.egg-info/PKG-INFO
DNBC4tools.egg-info/SOURCES.txt
DNBC4tools.egg-info/dependency_links.txt
DNBC4tools.egg-info/entry_points.txt
DNBC4tools.egg-info/top_level.txt
dnbc4tools/__init__.py
dnbc4tools/dnbc4tools.py
dnbc4tools/atac/__init__.py
dnbc4tools/atac/analysis.py
dnbc4tools/atac/data.py
dnbc4tools/atac/decon.py
dnbc4tools/atac/dnbc4atac.py
dnbc4tools/atac/mkref.py
dnbc4tools/atac/multi.py
dnbc4tools/atac/report.py
dnbc4tools/atac/run.py
dnbc4tools/atac/src/Cluster_Annotation.R
dnbc4tools/atac/src/generate_report.py
dnbc4tools/config/adapter.txt
dnbc4tools/config/oligo_type8.txt
dnbc4tools/config/scRNA_beads_darkReaction.json
dnbc4tools/config/scRNA_oligo_R2_noDarkReaction.json
dnbc4tools/config/scRNA_oligo_darkReaction.json
dnbc4tools/config/whitelist_atac.txt.gz
dnbc4tools/config/blacklist/hg19.full.blacklist.bed
dnbc4tools/config/blacklist/hg38.full.blacklist.bed
dnbc4tools/config/blacklist/mm10.full.blacklist.bed
dnbc4tools/config/cellAnno/HCL.ref.csv.gz
dnbc4tools/config/cellAnno/MCA.ref.csv.gz
dnbc4tools/config/scRNAv1HT/scRNA_beads_noDarkReaction_v1.json
dnbc4tools/config/scRNAv1HT/scRNA_oligo_noDarkReaction_v1.json
dnbc4tools/config/scRNAv2HT/scRNA_beads_noDarkReaction_v2.json
dnbc4tools/config/scRNAv2HT/scRNA_oligo_noDarkReaction_v2.json
dnbc4tools/rna/__init__.py
dnbc4tools/rna/analysis.py
dnbc4tools/rna/count.py
dnbc4tools/rna/data.py
dnbc4tools/rna/dnbc4rna.py
dnbc4tools/rna/mkref.py
dnbc4tools/rna/multi.py
dnbc4tools/rna/report.py
dnbc4tools/rna/run.py
dnbc4tools/rna/src/__init__.py
dnbc4tools/rna/src/cellMerge.py
dnbc4tools/rna/src/cell_calling.R
dnbc4tools/rna/src/combinedListOfBeads.py
dnbc4tools/rna/src/generate_report.py
dnbc4tools/rna/src/saturation.py
dnbc4tools/rna/src/scanpy_cluster.py
dnbc4tools/rna/src/star_anno.py
dnbc4tools/software/Anno
dnbc4tools/software/PISA
dnbc4tools/software/chromap
dnbc4tools/software/mergeBarcodes
dnbc4tools/software/parseFq
dnbc4tools/software/scStar
dnbc4tools/software/similarityOfBeads
dnbc4tools/software/tagAdd
dnbc4tools/software/d2c/bin/CHANGELOG.md
dnbc4tools/software/d2c/bin/README.md
dnbc4tools/software/d2c/bin/barcode.list
dnbc4tools/software/d2c/bin/d2c
dnbc4tools/software/d2c/bin/plot.pyc
dnbc4tools/software/d2c/bin/rank.R
dnbc4tools/software/d2c/bin/tn5.list
dnbc4tools/software/d2c/bin/anno/TSS/GRCh37.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/GRCh38.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/GRCm37.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/GRCm38.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/hg19-mm10.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/hg19-mm10_nochr.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/hg19.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/hg19_mm10_c.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/hg38.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/mm10.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/TSS/mm9.refGene.TSS.bed
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_GRCh37.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_GRCh38.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_GRCm37.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_GRCm38.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_hg19-mm10.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_hg19-mm10_nochr.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_hg19.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_hg19_mm10_c.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_hg38.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_mm10.sizes
dnbc4tools/software/d2c/bin/anno/bedtools/chrom_mm9.sizes
dnbc4tools/software/d2c/bin/anno/blacklist/GRCh37.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/GRCh38.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/GRCm37.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/GRCm38.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/hg19-mm10.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/hg19-mm10_nochr.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/hg19.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/hg19_mm10_c.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/hg38.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/mm10.full.blacklist.bed
dnbc4tools/software/d2c/bin/anno/blacklist/mm9.full.blacklist.bed
dnbc4tools/software/d2c/lib/libbarcodeRank.a
dnbc4tools/software/d2c/lib/libdeflate.so.0
dnbc4tools/software/d2c/lib/libhts.so.2
dnbc4tools/software/d2c/lib/libpython3.8.so.1.0
dnbc4tools/template/template_scATAC.html
dnbc4tools/template/template_scRNA.html
dnbc4tools/tools/__init__.py
dnbc4tools/tools/_plotly.py
dnbc4tools/tools/changetag.py
dnbc4tools/tools/clean.py
dnbc4tools/tools/mergeraw.py
dnbc4tools/tools/mkgtf.py
dnbc4tools/tools/text.py
dnbc4tools/tools/utils.py