LICENCE.txt
MANIFEST.in
README.rst
ez_setup.py
pypi-readme.rst
pyproject.toml
setup.py
dnaweaver/__init__.py
dnaweaver/tools.py
dnaweaver/version.py
dnaweaver.egg-info/PKG-INFO
dnaweaver.egg-info/SOURCES.txt
dnaweaver.egg-info/dependency_links.txt
dnaweaver.egg-info/requires.txt
dnaweaver.egg-info/top_level.txt
dnaweaver/AssemblyPlanReport/AssemblyPlanReport.py
dnaweaver/AssemblyPlanReport/ObjectDict.py
dnaweaver/AssemblyPlanReport/__init__.py
dnaweaver/AssemblyPlanReport/config.py
dnaweaver/AssemblyPlanReport/assets/fonts/OpenSans-Light.ttf
dnaweaver/AssemblyPlanReport/assets/fonts/fontawesome-webfont.ttf
dnaweaver/AssemblyPlanReport/assets/templates/FOLDER_README.txt
dnaweaver/AssemblyPlanReport/assets/templates/report_template.html
dnaweaver/AssemblyPlanReport/assets/templates/static/css/dnaweaver_report.css
dnaweaver/AssemblyPlanReport/assets/templates/static/images/assembly_blocks.svg
dnaweaver/AssemblyPlanReport/assets/templates/static/images/dna_weaver_logo.svg
dnaweaver/AssemblyPlanReport/assets/templates/static/images/egf_logo.png
dnaweaver/AssemblyPlanReport/assets/templates/static/images/supply_chain.svg
dnaweaver/AssemblyPlanReport/mixins/FolderReportMixin.py
dnaweaver/AssemblyPlanReport/mixins/GenbankExportMixin.py
dnaweaver/AssemblyPlanReport/mixins/PdfReportMixin.py
dnaweaver/AssemblyPlanReport/mixins/__init__.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/AssemblyBlocksMixin.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/AssemblyGraphMixin.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/ColorsMixin.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/PlotsMixin.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/TimelineMixin.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/__init__.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/give_quotes_html_locations.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/matplotlib_export.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/plot_supply_network.py
dnaweaver/AssemblyPlanReport/mixins/PlotsMixin/plot_tree_graph.py
dnaweaver/DnaAssemblyMethod/BluntEndAssemblyMethod.py
dnaweaver/DnaAssemblyMethod/DnaAssemblyMethod.py
dnaweaver/DnaAssemblyMethod/GoldenGateAssemblyMethod.py
dnaweaver/DnaAssemblyMethod/OverlapingAssemblyMethod.py
dnaweaver/DnaAssemblyMethod/__init__.py
dnaweaver/DnaQuote/DnaQuote.py
dnaweaver/DnaQuote/ExportsMixin.py
dnaweaver/DnaQuote/PostProcessingMixin.py
dnaweaver/DnaQuote/__init__.py
dnaweaver/DnaSupplier/DnaSupplier.py
dnaweaver/DnaSupplier/__init__.py
dnaweaver/DnaSupplier/builtin_constraints.py
dnaweaver/DnaSupplier/builtin_pricings.py
dnaweaver/DnaSupplier/builtin_suppliers/CommercialDnaOffer.py
dnaweaver/DnaSupplier/builtin_suppliers/DnaSuppliersComparator.py
dnaweaver/DnaSupplier/builtin_suppliers/PartsLibrary.py
dnaweaver/DnaSupplier/builtin_suppliers/PcrExtractionStation.py
dnaweaver/DnaSupplier/builtin_suppliers/PcrLinearizationStation.py
dnaweaver/DnaSupplier/builtin_suppliers/SequenceAdapter.py
dnaweaver/DnaSupplier/builtin_suppliers/__init__.py
dnaweaver/DnaSupplier/builtin_suppliers/DnaAssemblyStation/DnaAssemblyStation.py
dnaweaver/DnaSupplier/builtin_suppliers/DnaAssemblyStation/SequenceDecomposer.py
dnaweaver/DnaSupplier/builtin_suppliers/DnaAssemblyStation/__init__.py
dnaweaver/DnaSupplier/builtin_suppliers/DnaAssemblyStation/shortest_path_algorithms.py
dnaweaver/DnaSupplier/mixins/ConstraintsMixin.py
dnaweaver/DnaSupplier/mixins/JsonImportMixin.py
dnaweaver/DnaSupplier/mixins/SupplyGraphNetwork.py
dnaweaver/DnaSupplier/mixins/__init__.py
dnaweaver/SegmentSelector/FixedSizeSegmentSelector.py
dnaweaver/SegmentSelector/SegmentSelector.py
dnaweaver/SegmentSelector/TmSegmentSelector.py
dnaweaver/SegmentSelector/__init__.py
dnaweaver/biotools/SequenceString.py
dnaweaver/biotools/__init__.py
dnaweaver/biotools/sequence_analysis.py
dnaweaver/biotools/sequence_homologies.py
dnaweaver/biotools/sequence_operations.py
dnaweaver/utils/OptimizeManufacturability.py
dnaweaver/utils/__init__.py
dnaweaver/utils/plot_decomposition_graph.py
examples/10kb_from_2_vendors.py
examples/10kb_from_vendor_or_oligos.py
examples/manuscript_examples/50kb_assembly_from_oligos/50kb_assembly_from_oligos.py
examples/manuscript_examples/EMMA_assembly/EMMA_assembly.py
examples/manuscript_examples/a_star_factor_comparison/a_star_factor_comparison.py
examples/manuscript_examples/a_star_factor_comparison/generate_supply_network.py
examples/manuscript_examples/different_deadlines/different_deadlines.py
examples/manuscript_examples/dna_assembly_from_2_vendors/get_fragments_from_2_vendors.py
examples/manuscript_examples/dna_assembly_from_2_vendors/get_fragments_from_one_of_2_vendors.py
examples/scenarios/example_with_adapters/example_with_adapters.py
examples/scenarios/import_network_from_json/import_network_from_json.py
examples/scenarios/manufacturability_optimization/manufacturability_optimization.py
examples/scenarios/parts_assembly_with_ever_more_suppliers/example.py
examples/scenarios/parts_assembly_with_ever_more_suppliers/plotting_helpers.py
examples/scenarios/site_mutagenesis_simple/site_mutagenesis_example.py
examples/scenarios/three-step_assembly/three-step_assembly.py
tests/test_basics.py
tests/test_biotools.py
tests/test_full_report.py
tests/test_lead_time_limit.py
tests/test_max_price.py
tests/test_optimization.py
tests/test_sapi_enzyme_restriction_site.py
tests/test_circular_sequences/test_circular_sequences.py
tests/test_scenarios/test_domestication_from_json/test_domestication_from_json.py
tests/test_scenarios/test_emma_homology_cassette/test_emma_homology_cassette.py
tests/test_scenarios/test_with_adapters/test_example_with_adapters.py