Metadata-Version: 2.4
Name: dnacauldron
Version: 2.0.11
Summary: Cloning simulation for DNA assembly (Golden Gate, Gibson...)
Author: Zulko
License-Expression: MIT
Project-URL: Homepage, https://github.com/Edinburgh-Genome-Foundry/dnacauldron
Keywords: DNA,assembly,cloning,simulator,synthetic biology
Description-Content-Type: text/x-rst
License-File: LICENCE.txt
Requires-Dist: Biopython
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: fuzzywuzzy
Requires-Dist: pandas
Requires-Dist: scipy
Requires-Dist: networkx
Requires-Dist: dna_features_viewer
Requires-Dist: flametree
Requires-Dist: snapgene_reader
Requires-Dist: proglog
Requires-Dist: xlwt
Requires-Dist: openpyxl
Requires-Dist: python-Levenshtein
Requires-Dist: xlrd
Provides-Extra: reports
Requires-Dist: pdf_reports; extra == "reports"
Dynamic: license-file

DNA Cauldron
============

DNA Cauldron provides a generic cloning simulation framework to predict
constructs sequences and detect assembly flaws.
It can simulate Golden-Gate, with extra features like enzyme or
connector parts autoselection, and other methods like Gibson Assembly,
LCR Assembly, BASIC assembly, BioBrick assembly.
It supports single and combinatorial assemblies, hierarchical assemblies, and
produces nice reports for traceability and troubleshooting.


Infos
-----

**PIP installation:**

.. code:: bash

  pip install dnacauldron

**Web documentation:** `<https://edinburgh-genome-foundry.github.io/DnaCauldron/>`_

**Github Page:** `<https://github.com/Edinburgh-Genome-Foundry/DnaCauldron>`_

**Live demo:** `<http://cuba.genomefoundry.org/simulate_gg_assemblies>`_

**License:** MIT

Copyright 2020 Edinburgh Genome Foundry, University of Edinburgh


More biology software
---------------------

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
  :target: https://edinburgh-genome-foundry.github.io/

DNA Cauldron is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.
