Metadata-Version: 1.1
Name: django-phenotype-ontologies
Version: 0.2.2
Summary: Django app to parse/load phenotype ontologies (OncoTree, HPO, MONDO, etc)
Home-page: https://github.com/chopdgd/django-phenotype-ontologies
Author: Michael A. Gonzalez
Author-email: GonzalezMA@email.chop.edu
License: MIT
Description: =============================
        Django Phenotype Ontologies
        =============================
        
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              :alt: Python 3
        
        Django app to parse/load phenotype ontologies (OncoTree, HPO, MONDO, etc)
        
        Documentation
        -------------
        
        The full documentation is at https://django-phenotype-ontologies.readthedocs.io.
        
        Quickstart
        ----------
        
        Install Django Phenotype Ontologies::
        
            pip install django-phenotype-ontologies
        
        Add it to your `INSTALLED_APPS`:
        
        .. code-block:: python
        
            INSTALLED_APPS = (
                ...
                'phenotype_ontologies',
                ...
            )
        
        Add Django Phenotype Ontologies's URL patterns:
        
        .. code-block:: python
        
            from phenotype_ontologies import urls as phenotype_ontologies_urls
        
        
            urlpatterns = [
                ...
                url(r'^', include(phenotype_ontologies_urls, namespace='phenotype_ontologies')),
                ...
            ]
        
        Features
        --------
        
        * syncs OBO from MONDO, HPO, and NCIT (OncoTree)
        * REST API to interact with models
        * GraphQL Nodes to be incorporated to existing GraphQL setups with graphene_django
        
        Running Tests
        -------------
        
        Does the code actually work?
        
        ::
        
            source <YOURVIRTUALENV>/bin/activate
            (myenv) $ pip install tox
            (myenv) $ tox
        
        Credits
        -------
        
        Tools used in rendering this package:
        
        *  Cookiecutter_
        *  `cookiecutter-djangopackage`_
        
        .. _Cookiecutter: https://github.com/audreyr/cookiecutter
        .. _`cookiecutter-djangopackage`: https://github.com/pydanny/cookiecutter-djangopackage
        
        
        
        
        History
        -------
        
        0.1.0 (2018-04-10)
        ++++++++++++++++++
        
        * Models for Phenotype Ontologies
        * REST API
        * GraphQL Nodes
        * Sync methods for PURL of MONDO, HPO, NCIT
        
        0.1.1 (2018-04-10)
        ++++++++++++++++++
        
        `Full Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.0...v0.1.1>`_
        
        * Updated sync to sync_ontology to make it more descriptive
        
        0.1.2 (2018-04-10)
        ++++++++++++++++++
        
        `Full Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.1...v0.1.2>`_
        
        * Added better support for MONDO. A few oddities were causing errors w/ pronto.
        
        0.1.3 (2018-04-18)
        ++++++++++++++++++
        
        `Full Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.2...v0.1.3>`_
        
        * Updated 3rd party libs
        
        0.1.4 (2018-05-16)
        ++++++++++++++++++
        
        `Full Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.3...v0.1.4>`_
        
        * Updated setup.py to read from requirements.txt
        
        
        0.2.0 (2018-06-01)
        ++++++++++++++++++
        
        `Full Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.1.4...v0.2.0>`_
        
        * Removed support for GraphQL
        
        0.2.1 (2018-07-27)
        ++++++++++++++++++
        
        `Full Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.0...v0.2.1>`_
        
        * Updated NCIT to be OncoTree - since we are using the onco tree specific ontology
        
        0.2.2 (2018-08-13)
        ++++++++++++++++++
        
        `Full Changelog <https://github.com/chopdgd/django-phenotype-ontologies/compare/v0.2.1...v0.2.2>`_
        
        * Updated 3rd party requirements. Some requirements had changed so it was causing failures
        
Keywords: django-phenotype-ontologies
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Framework :: Django
Classifier: Framework :: Django :: 1.11
Classifier: Framework :: Django :: 2.0
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
