Metadata-Version: 2.1
Name: django-galaxy
Version: 0.0.2
Summary: Galaxy interfacing with Django
Home-page: https://mogi.readthedocs.io
Author: Thomas N lawson
Author-email: thomas.nigel.lawson@gmail.com
License: GPLv3
Platform: UNKNOWN
Classifier: Environment :: Web Environment
Classifier: Framework :: Django
Classifier: Framework :: Django :: 1.11
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Internet :: WWW/HTTP
Classifier: Topic :: Internet :: WWW/HTTP :: Dynamic Content
Requires-Dist: django (>=1.11.15)
Requires-Dist: django-rest-framework
Requires-Dist: django-gfiles
Requires-Dist: bioblend

===============
django-galaxy
===============


|Build Status (Travis)| |Py versions|


Django interfacing with Galaxy. Backend using the bioblend API.

`Galaxy <https://galaxyproject.org/>`__ is a web based workflow platform that can be used to perform bioinformatics in a reproducible and sharable environment.

Further documentation available on `ReadTheDocs <https://mogi.readthedocs.io/en/latest/>`__

Quick start
-----------

1. Add "galaxy" and django application dependencies to your INSTALLED_APPS setting like this (galaxy should come before gfiles)::

    INSTALLED_APPS = [
        ...
        'galaxy',
        'gfiles',


        'django_tables2',
        'bootstrap3',
        'django_tables2_column_shifter',
        'django_sb_admin',
        'django_filter'
    ]

2. Include the polls URLconf in your project urls.py like this::

    url(r'^', include('gfiles.urls')),
    url('galaxy/', include('galaxy.urls')),

3. Run `python manage.py migrate` to create the models.

4. Start the development server and visit http://127.0.0.1:8000

5. Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/

6. View summary of Galaxy instances and options http://127.0.0.1:8000/galaxy/galaxy_summary/

7. Register Galaxy instance http://127.0.0.1:8000/galaxy/addgi/

8. Register Galaxy user http://127.0.0.1:8000/galaxy/addguser/

9. Upload file(s) to Django (for bulk upload of files see django-misa and django-mogi) http://127.0.0.1:8000/upload_gfile/

10. Upload file(s) to Galaxy data library (for bulk upload of files see django-misa and django-mogi) http://127.0.0.1:8000/galaxy/files_to_galaxy_datalib/

11. Run workflow (for running workflows with ISA data see django-misa and django-mogi) http://127.0.0.1:8000/galaxy/workflow_summary/

12. View histories http://127.0.0.1:8000/galaxy/history_status/


.. |Build Status (Travis)| image:: https://travis-ci.com/computational-metabolomics/django-galaxy.svg?branch=master
   :target: https://travis-ci.com/computational-metabolomics/django-galaxy/

.. |Py versions| image:: https://img.shields.io/pypi/pyversions/django-galaxy.svg?style=flat&maxAge=3600
   :target: https://pypi.python.org/pypi/django-galaxy/


