.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
LICENSE
README.md
pyproject.toml
.github/ISSUE_TEMPLATE/bug-report.yaml
.github/ISSUE_TEMPLATE/feature-request.yaml
.github/workflows/checks.yaml
.github/workflows/pr-priority-label.yaml
.github/workflows/release.yml
.github/workflows/stale.yaml
analysis/ncit/civic-misses.txt
analysis/ncit/metakb-coverage.ipynb
docs/Makefile
docs/make.bat
docs/source/changelog.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/index.rst
docs/source/install.rst
docs/source/license.rst
docs/source/usage.rst
docs/source/_templates/module_summary.rst
docs/source/_templates/module_summary_inh.rst
docs/source/managing_data/dynamodb.rst
docs/source/managing_data/index.rst
docs/source/managing_data/loading_and_updating_data.rst
docs/source/managing_data/postgresql.rst
docs/source/reference/index.rst
docs/source/reference/api/disease.query.rst
docs/source/reference/api/disease.schemas.rst
docs/source/reference/api/database/disease.database.database.rst
docs/source/reference/api/database/disease.database.dynamodb.rst
docs/source/reference/api/database/disease.database.postgresql.rst
docs/source/reference/api/etl/disease.etl.base.rst
docs/source/reference/api/etl/disease.etl.do.rst
docs/source/reference/api/etl/disease.etl.merge.rst
docs/source/reference/api/etl/disease.etl.mondo.rst
docs/source/reference/api/etl/disease.etl.ncit.rst
docs/source/reference/api/etl/disease.etl.omim.rst
docs/source/reference/api/etl/disease.etl.oncotree.rst
docs/source/reference/api/etl/disease.etl.update.rst
src/disease/__init__.py
src/disease/cli.py
src/disease/config.py
src/disease/main.py
src/disease/query.py
src/disease/schemas.py
src/disease/utils.py
src/disease/database/__init__.py
src/disease/database/database.py
src/disease/database/dynamodb.py
src/disease/database/postgresql.py
src/disease/database/postgresql/add_fkeys.sql
src/disease/database/postgresql/add_indexes.sql
src/disease/database/postgresql/create_record_lookup_view.sql
src/disease/database/postgresql/create_tables.sql
src/disease/database/postgresql/delete_normalized_concepts.sql
src/disease/database/postgresql/drop_fkeys.sql
src/disease/database/postgresql/drop_indexes.sql
src/disease/etl/__init__.py
src/disease/etl/base.py
src/disease/etl/do.py
src/disease/etl/merge.py
src/disease/etl/mondo.py
src/disease/etl/ncit.py
src/disease/etl/omim.py
src/disease/etl/oncotree.py
src/disease/etl/rules.csv
src/disease/etl/rules.py
src/disease/etl/update.py
src/disease_normalizer.egg-info/PKG-INFO
src/disease_normalizer.egg-info/SOURCES.txt
src/disease_normalizer.egg-info/dependency_links.txt
src/disease_normalizer.egg-info/entry_points.txt
src/disease_normalizer.egg-info/requires.txt
src/disease_normalizer.egg-info/top_level.txt
tests/conftest.py
tests/data/service_info_openapi.yaml
tests/data/do/do_20250627.owl
tests/data/mondo/mondo_20241203.obo
tests/data/ncit/ncit_25.08d.owl
tests/data/omim/omim_20240806.tsv
tests/data/oncotree/oncotree_20211102.json
tests/scripts/README.md
tests/scripts/build_do_data.py
tests/scripts/build_mondo_data.py
tests/scripts/build_ncit_data.py
tests/scripts/build_omim_data.py
tests/scripts/build_oncotree_data.py
tests/scripts/do_terms.txt
tests/scripts/dynamodb_run.sh
tests/unit/test_api.py
tests/unit/test_database.py
tests/unit/test_do.py
tests/unit/test_emit_warnings.py
tests/unit/test_merge.py
tests/unit/test_mondo.py
tests/unit/test_ncit.py
tests/unit/test_omim.py
tests/unit/test_oncotree.py
tests/unit/test_query.py
tests/unit/test_schemas.py
tests/unit/test_utils.py